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RE: [Condor-users] About Condor/BLAST
- Date: Wed, 13 Oct 2004 18:52:51 +0100
- From: "Nicolas Bertrand" <nsb@xxxxxxxxx>
- Subject: RE: [Condor-users] About Condor/BLAST
Try adding "Universe = Vanilla" to your submission file.
It may be that the blast executable on your system have not been
relinked to use the "Standard universe".
For more info, see:
http://www.cs.wisc.edu/condor/manual/v6.6/3_10Setting_Up.html#sec:full-condor-compile
and
http://www.cs.wisc.edu/condor/manual/v6.6/3_2Installation.html#SECTION00429000000000000000
Nicolas
>>> pravenj@xxxxxxx 10/13/04 6:07 PM >>>
When I try to run a BLAST job in the condor pool I get the following
error in the log file:
000 (266.000.000) 10/13 12:04:19 Job submitted from host:
<10.0.0.45:43753
...
001 (266.000.000) 10/13 12:04:22 Job executing on host:
<10.0.0.45:43754>
...
002 (266.000.000) 10/13 12:04:22 (1) Job not properly linked for Condor.
...
009 (266.000.000) 10/13 12:04:22 Job was aborted by the user.
...
I have submitted the job using condor_submit using a cmd file.
Here is my entry in the cmd file:
####################
##
## Test Condor command file
##
####################
executable = /usr/local/bin/blastall
output = /home/pravenj/blast/condor/test1.out
error = /home/pravenj/blast/condor/test1.err
log = /home/pravenj/blast/condor/test1.log
arguments = -p blastn -d /home/pravenj/blast/condor/yeast.nt -i
/home/pravenj/blast/condor/test.txt -o
/home/pravenj/blast/condor/blast$queue
Can someone tell what that error means???
Thanks
Pravin