[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[Condor-users] Different arguments file for each job

Condor users,

I just finish installing condor and I'm trying to figure out a way to have submit a job with different file as argument for each job.
I have a directory with 100s of files, for each file, I run the following program (simplified call):
blast -i <one_file>

How can create a job submit file that will enumerate all my inputs files:

Here the file I use currently, which only works for one file:
cutable 	= blastall
Universe	= vanilla
Error		= err.$(Process)
Output		= out.$(Process)
Log		= blast.log
arguments	= -i A47255.dat
transfer_input_files = A47255.dat
should_transfer_files = YES
when_to_transfer_output = ON_EXIT
Requirements = Memory > 200
Queue 1