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RE: ÂÃÂÂÂÂ RE: [Condor-users] Help:How to change the arguments in the submitfile?
- Date: Tue, 6 Sep 2005 12:15:26 +1000
- From: "Philip Crawford" <p.crawford@xxxxxxxxxxx>
- Subject: RE: ÂÃÂÂÂÂ RE: [Condor-users] Help:How to change the arguments in the submitfile?
ï
There are a couple of ways to run shell scripts on
Windows 2000.
1. You can use Cygwin, (free Linux emulator available
from www.cygwin.com ). The default
installation doesn't include C-shell, so you will need to install
Shells.
I'm using Cygwin on Windows XP
myself.
2. Microsoft have a "Microsoft Services for Unix"
installer which is certainly available for English. I don't know if it works on
other language installations of Windows. I've had problems with cycling a script
through generating large numbers of files on this.
Another way to look at this is through DOS .bat files. You can definitely
loop in a batch file. You can also use the redirect ">>" to append
to a file. Parameters are %1, %2, etc. You can't use the "\n" in an echo command
but I think it automatically finishes with a new line. You also don't use
quotation marks "" in an echo statement.
Cheers,
Phil
__________________________________________________
Philip Crawford, B. Comp. Sc.,
MIEEE
Structural BioInformatics and Drug
Design Group
School of Medical Sciences
The University of NSW
Phone: +61-2-9385 2564
Mobile: +61-419-294 698
Fax: +61-2-9385 1059
__________________________________________________
Thanks a lot!
My OS is windows 2000 so i cannot write
shellscripts.
I wander if there is any good idea to set the line "argument =
..." in the submit file to let the program run with different parameters
automatically?
The first idea Bruno Goncalves gave is some what feasible,
but my arguments are really too many. Could anybody ever resolve this problem?
Please help,Thank you very much!
Philip Crawford
<p.crawford@xxxxxxxxxxx> åéï
I've been using a pair of shellscripts to generate
some jobs. The outer one has 5 parameters, one of which is a list of data
files to process.
I use the "foreach" construct which is C-shell
specific. This generates a submit file which contains nearly 300 jobs. The
inner script is the script "build_input" which builds separate input files for
each job. (The executable has many parameters.)
If the list of files is "files.lst" it is passed as a
parameter to the script which asigns it to a variable
"list_name",
foreach f (`cat ${list_name}`)
set db =
${f:r}
./build_input $db
$max_mols $rank_mols
echo
"transfer_input_files = ${db}.in, ${f}, ... etc" >>
${submit_file}
echo "Arguments = -i ${db}.in -o ${db}.out.txt\n"
>> ${submit_file}
echo "Queue\n\n" >>
${submit_file}
end
Depending on how your parameters vary, you may need
some nested for loops to do something similar.
Hope
this helps.
Cheers,
Phil Crawford
__________________________________________________
Philip Crawford, B. Comp. Sc.,
MIEEE
Structural BioInformatics and Drug
Design Group
School of Medical
Sciences
The University of NSW
Phone: +61-2-9385 2564
Mobile: +61-419-294 698
Fax: +61-2-9385 1059
__________________________________________________
You can do something like this:
Arguments = arg1 arg2
arg3...
Queue 1
Arguments = arg1' arg2' arg3' ...
Queue
1
etc...
Just list all the different input arguments you need to run
and queue a different job for each of them.
On 9/5/05, éæ
<lumiousy@xxxxxxxxxxxx>
wrote:
I have to run a program with a lot of
different arguments, but i don't know how to change them
automatically.
Could anybody help me please?
for example: the program test.exe have 5
arguments, the first is constant 5,the second varies from 0 to 100, so does
the third and the forth.How can i write the submit file to let the job run
with different arguments by themselves .
I am looking forward to
it!!! Thank you!!!
DO YOU YAHOO!?
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--
*******************************************
Bruno
Miguel Tavares Goncalves, MS
PhD Candiate
Emory University
Department
of Physics
Office No. N117-C
400 Dowman Drive
Atlanta, Georgia
30322
Homepage: www.bgoncalves.com
Email: bgoncalves@xxxxxxxxx
Phone: (404)
712-2441
Fax: (404)
727-0873
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DO YOU YAHOO!?
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