Re: [Condor-users] quoting

[Dimitri Maziuk <dmaziuk@xxxxxxxxxxxxx>]

On Wednesday 13 August 2008 14:57:16 Gary Orser wrote:
> Hi All,
>
> Can't find in Google or the manual how quoting works
> I need to pass an argument like
>
> arguments   =  -d nr.fasta.000 -i recA_metareads_prot.fasta -p blastp
> -F "m S" -b 10 -v 0 -e 0.001
>
> to the program.  Can't seem to get the quoting right.  The "m S" needs
> to be passed to the program as a single argument to -F

This works with condor-7.0.1:

arguments    = "-p blastp -d 'bmrb r' -F F -m 7 -i $(STARFILE) -o $(XMLFILE)"

Dimitri
-- 
Dimitri Maziuk
Programmer/sysadmin
BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu