[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [Condor-users] segmentation fault in vanilla universe



Respected Matt,

Thank you for responding.
Here the scenario is different. The node from where i am submitting the job is not having matlab installed, the path of the executable which is been used in the script is exist on grid1.iiitm.ac.in (/usr/local/Matlab/bin/matlab). And there is no error in execution of that command on grid1.iiitm.ac.in node, mean there is no problem from matlab side,

In concise, i have a script file that is suppose to run grid1.iiitm.ac.in.

Please suggest.

Thanks and Regards,
Satyanarayan Rao

2009/12/31 Matthew Farrellee <matt@xxxxxxxxxx>
You might try configuring grid1 to capture core files. Though if the bug is in matlab it might be tough to get fixed.

Best,


matt

On 12/30/2009 12:33 PM, satyanarayan rao wrote:
> Dear Hailong,
>
> The answer is no, the script is running fine on the node
> grid1.iiitm.ac.in <http://grid1.iiitm.ac.in>. The problem is something
> else which i am not able to recognise.
>
> Thanks and regards,
> Satyanarayan Rao
>
> On Wed, Dec 30, 2009 at 5:19 PM, hailong.yang1115
> <hailong.yang1115@xxxxxxxxx <mailto:hailong.yang1115@xxxxxxxxx>> wrote:
>
>     Hi Satyanarayan,
>
>     Have you tried to run the script file run_matlab.sh on the execute
>     machine *grid1.iiitm.ac.in* <http://grid1.iiitm.ac.in/>? Did it run
>     correctly? It seems the commands you wrote in the script file met
>     with segmentation faults.
>
>     -Hailong
>
>     2009-12-30
>     ------------------------------------------------------------------------
>     ***********************************************
>     * Hailong Yang, PhD. Candidate
>     * Sino-German Joint Software Institute,
>     * School of Computer Science&Engineering, Beihang University
>     * Phone: (86-010)82315908
>     * Email: hailong.yang1115@xxxxxxxxx <mailto:hailong.yang1115@xxxxxxxxx>
>     * Address: G413, New Main Building in Beihang University,
>     *              No.37 XueYuan Road,HaiDian District,
>     *              Beijing,P.R.China,100191
>     ***********************************************
>     ------------------------------------------------------------------------
>     *发件人:* satyanarayan rao
>     *发送时间:* 2009-12-30  19:13:23
>     *收件人:* Condor-Users Mail List
>     *抄送:*
>     *主题:* [Condor-users] segmentation fault in vanilla universe
>     Hello All,
>
>     I am having problem with running the matlab command using vanilla
>     universe.
>     I have matlab installed on two nodes, i am using only
>     one(*grid1.iiitm.ac.in <http://grid1.iiitm.ac.in>*) in submit by
>     putting it in requirement parameter.
>     The command which i am using is successfully running on the node,
>     but if i am submitting using vanilla universe it is giving error.
>     Process which i followed is following.
>
>     [grid-node@grid-server ~]$ cat run_matlab.sh
>     #!/bin/bash
>     /usr/local/Matlab/bin/matlab -nojvm -nosplash -nodisplay <
>     /usr/local/Matlab/bin/test_matlab.m
>     hostname
>     [grid-node@grid-server ~]$
>
>     [grid-node@grid-server ~]$ cat vanilla.submit
>
>                 Executable     = /home/grid-node/run_matlab.sh
>                 Universe       = vanilla
>                 Requirements   = (machine=="grid1.iiitm.ac.in
>     <http://grid1.iiitm.ac.in>")
>                 Error   = err.$(Process)
>                 Output  = out.$(Process)
>                  Log = foo.log
>                  transfer_executable = true
>                  should_transfer_files = YES
>                  when_to_transfer_output = ON_EXIT
>                  Queue 10
>
>     [grid-node@grid-server ~]$
>
>
>     [grid-node@grid-server ~]$ condor_status
>
>     Name               OpSys      Arch   State     Activity LoadAv Mem
>     ActvtyTime
>
>     slot1@anlab-node8. LINUX      INTEL  Unclaimed Idle     0.000   497
>     0+03:10:05
>     slot2@anlab-node8. LINUX      INTEL  Unclaimed Idle     0.000   497
>     0+15:03:00
>     slot1@grid-server. LINUX      INTEL  Unclaimed Idle     0.840  1006
>     0+03:15:07
>     slot2@grid-server. LINUX      INTEL  Unclaimed Idle     0.000  1006
>     0+15:15:31
>     grid1.iiitm.ac.in <http://grid1.iiitm.ac.in>  LINUX      INTEL
>     Unclaimed Idle     0.000   242  0+02:15:04
>
>                          Total Owner Claimed Unclaimed Matched
>     Preempting Backfill
>
>              INTEL/LINUX     5     0       0         5       0
>     0        0
>
>                    Total     5     0       0         5       0
>     0        0
>     [grid-node@grid-server ~]$
>
>
>     [grid-node@grid-server ~]$ condor_submit vanilla.submit
>     Submitting job(s)..........
>     Logging submit event(s)..........
>     10 job(s) submitted to cluster 1042.
>     [grid-node@grid-server ~]$
>
>     [grid-node@grid-server ~]$ cat out.1
>     grid1.iiitm.ac.in <http://grid1.iiitm.ac.in>
>     [grid-node@grid-server ~]$ cat err.1
>     /opt/condor-7.2.4/local.grid1/execute/dir_15382/condor_exec.exe:
>     line 2: 15385 Segmentation fault      /usr/local/Matlab/bin/matlab
>     -nojvm -nosplash -nodisplay </usr/local/Matlab/bin/test_matlab.m
>     [grid-node@grid-server ~]$
>
>     Any help will be greatly appreciated.
>
>     Thanks and Regards,
>     Satyanarayan Rao
>
>
>     --
>     Satyanarayan Rao
>     ABV-IIITM Gwalior
>     http://www.iiitm.ac.in
>     Ph: +91-9179346657
>
>
>     _______________________________________________
>     Condor-users mailing list
>     To unsubscribe, send a message to condor-users-request@xxxxxxxxxxx
>     <mailto:condor-users-request@xxxxxxxxxxx> with a
>     subject: Unsubscribe
>     You can also unsubscribe by visiting
>     https://lists.cs.wisc.edu/mailman/listinfo/condor-users
>
>     The archives can be found at:
>     https://lists.cs.wisc.edu/archive/condor-users/
>
>
>
>
> --
> Satyanarayan Rao
> ABV-IIITM Gwalior
> http://www.iiitm.ac.in
> Ph: +91-9179346657
>
>
>
> _______________________________________________
> Condor-users mailing list
> To unsubscribe, send a message to condor-users-request@xxxxxxxxxxx with a
> subject: Unsubscribe
> You can also unsubscribe by visiting
> https://lists.cs.wisc.edu/mailman/listinfo/condor-users
>
> The archives can be found at:
> https://lists.cs.wisc.edu/archive/condor-users/

_______________________________________________
Condor-users mailing list
To unsubscribe, send a message to condor-users-request@xxxxxxxxxxx with a
subject: Unsubscribe
You can also unsubscribe by visiting
https://lists.cs.wisc.edu/mailman/listinfo/condor-users

The archives can be found at:
https://lists.cs.wisc.edu/archive/condor-users/



--
Satyanarayan Rao
ABV-IIITM Gwalior
http://www.iiitm.ac.in
Ph: +91-9179346657