[Condor-users] failed to run interconnected R file on condor

[Shruti Mudra <shruti.mudra@xxxxxxxxx>]

Hi Everyone,

 

I have a R file(Simulate_Data.R) which is calling other R file(bay_alpha.R) when i submit the calling file(Simulate_Data.R) to the condor i'm getting a error 

 

Error in file(file, "r", encoding = encoding) :
  cannot open the connection
Calls: source -> file
In addition: Warning message:
In file(file, "r", encoding = encoding) :
  cannot open file 'C:/Users/test_case/bay_alpha.R': Permission denied
Execution halted

 

here is my submit file test_R.sub

 

universe = vanilla

Executable =  Rscript.bat

should_transfer_files = YES

when_to_transfer_output = ON_EXIT

arguments = Simulate_Normal_Data.R

input = Simulate_Normal_Data.R

Output = test_r_out.out

Log = test_r_log.log

error = error_r.error

queue

 

where RScript.bat is as follows

 

set PATH=path to the R bin folder

R CMD BATCH --vanilla %1

 

can anyone please tell me where i went wrong

 

Thanks,