[Condor-users] Space inside arguments

[Edier Alberto Zapata Hernández <edalzap@xxxxxxxxx>]

good morning, I have this problem:

I need to run this command in Condor:

 blastall -p blastx -d '/home/condor/bBlast/db/a.thaliana.fas /home/condor/bBlast/db/go_lite.fas' -i 13680_seqs -b 5 -e 1e-5

I use this submitFile:

Universe = Vanilla
should_transfer_files = YES
when_to_transfer_output = ON_EXIT_OR_EVICT
transfer_executable = False
Executable = /bio/ncbi/bin/blastall
!= 0
Log = log-test.txt
Arguments = -p blastx -d '/home/condor/bBlast/db/a.thaliana.fas /home/condor/bBlast/db/go_lite.fas' -i 13680_seqs -b 5 -e 1e-5
Input = 13680_seqs
Error = Err-13680_seqs.txt
Output = Out-13680_seqs.txt
Queue

But every time I submit it, I get an error from blast, that the 5th argument (  /home/condor/bBlast/db/go_lite.fas) is wrong, so the 'string {space} String' is not working.

I already tryed with \', \", " and nothing.

Any idea?

Thank you very much.

----
Edier Alberto Zapata Hernández
Est. Ingeniería de Sistemas
Universidad de Valle