Re: [HTCondor-users] submitted jobs are not running

[Labounek Renà <xlabou01@xxxxxxxxxxxxxxxxxx>]

Ben,
I have not. I have found it finally too. i have written:

labounek@emperor:~$ sudo condor_rm -all
[sudo] password for labounek:
All jobs have been marked for removal
labounek@emperor:~$

Then I have changed the .sh files. So now there is:

#!/bin/sh
/usr/share/fsl/5.0/bin/bedpostx_single_slice.sh  
/home/labounek/test/dti 7 --nf=3 --fudge=1 --bi=1000 --nj=1250 --se=25  
--model=2 --cnonlinear

I have submitted jobs again, but now the output is bad again:




labounek@emperor:~$ /home/labounek/test/read_commands.sh
0000
Submitting job(s).
1 job(s) submitted to cluster 41.
0001
Submitting job(s).
1 job(s) submitted to cluster 42.
0002
Submitting job(s).
1 job(s) submitted to cluster 43.
0003
Submitting job(s).
1 job(s) submitted to cluster 44.
0004
Submitting job(s).
1 job(s) submitted to cluster 45.
0005
Submitting job(s).
1 job(s) submitted to cluster 46.
0006
Submitting job(s).
1 job(s) submitted to cluster 47.
0007
Submitting job(s).
1 job(s) submitted to cluster 48.
0008
Submitting job(s).
1 job(s) submitted to cluster 49.
0009
Submitting job(s).
1 job(s) submitted to cluster 50.
0010
Submitting job(s).
1 job(s) submitted to cluster 51.
0011
Submitting job(s).
1 job(s) submitted to cluster 52.
0012
Submitting job(s).
1 job(s) submitted to cluster 53.
0013
Submitting job(s).
1 job(s) submitted to cluster 54.
0014
Submitting job(s).
1 job(s) submitted to cluster 55.
0015
Submitting job(s).
1 job(s) submitted to cluster 56.
0016
Submitting job(s).
1 job(s) submitted to cluster 57.
0017
Submitting job(s).
1 job(s) submitted to cluster 58.
0018
Submitting job(s).
1 job(s) submitted to cluster 59.
0019
Submitting job(s).
1 job(s) submitted to cluster 60.
0020
Submitting job(s).
1 job(s) submitted to cluster 61.
0021
Submitting job(s).
1 job(s) submitted to cluster 62.
0022
Submitting job(s).
1 job(s) submitted to cluster 63.
0023
Submitting job(s).
1 job(s) submitted to cluster 64.
0024
Submitting job(s).
1 job(s) submitted to cluster 65.
0025
Submitting job(s).
1 job(s) submitted to cluster 66.
0026
Submitting job(s).
1 job(s) submitted to cluster 67.
0027
Submitting job(s).
1 job(s) submitted to cluster 68.
0028
Submitting job(s).
1 job(s) submitted to cluster 69.
0029
Submitting job(s).
1 job(s) submitted to cluster 70.
0030
Submitting job(s).
1 job(s) submitted to cluster 71.
0031
Submitting job(s).
1 job(s) submitted to cluster 72.
0032
Submitting job(s).
1 job(s) submitted to cluster 73.
0033
Submitting job(s).
1 job(s) submitted to cluster 74.
0034
Submitting job(s).
1 job(s) submitted to cluster 75.
0035
Submitting job(s).
1 job(s) submitted to cluster 76.
0036
Submitting job(s).
1 job(s) submitted to cluster 77.
0037
Submitting job(s).
1 job(s) submitted to cluster 78.
0038
Submitting job(s).
1 job(s) submitted to cluster 79.
0039
Submitting job(s).
1 job(s) submitted to cluster 80.
labounek@emperor:~$




labounek@emperor:~$ condor_q


-- Schedd: emperor.fnol.loc : <172.19.37.11:47599?...
 ID      OWNER            SUBMITTED     RUN_TIME ST PRI SIZE CMD

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended
labounek@emperor:~$


Rene


Cituji Ben Cotton <ben.cotton@xxxxxxxxxxxxxxxxxx>:

> On Thu, Mar 10, 2016 at 2:12 PM, Labounek RenÃ
> <xlabou01@xxxxxxxxxxxxxxxxxx> wrote:
> > Hi Todd,
> >
> > thanks there is trully an error. But what does it mean?
>
> Do you have the "shebang" at the top? i.e. #!/bin/sh  (or similar).
> You'll need that in order for scripts to run as HTCondor jobs.
>
>
> Thanks,
> BC
>
> --
> Ben Cotton
>
> Cycle Computing
> Better Answers. Faster.
>
> http://www.cyclecomputing.com
> twitter: @cyclecomputing
>
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