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[HTCondor-users] Spaces in attribute / Signal 6



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Running htcondor/focal,now 23.5.2-1 amd64 [installed]

on

Linux <server name>  5.4.0-172-generic #190-Ubuntu SMP Fri Feb 2 23:24:22 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
DISTRIB_DESCRIPTION="Ubuntu 20.04.6 LTS"

We have a software version STARTD attribute defined:

NMRPIPE = "11.5 rev 2023.105.21.31"

STARTD_ATTRS = ,Release,4DSPOT,ABACUS,ADAPTNMRENHANCER,AFNMR,ALATIS,ALPHAFOLD,AMATERASU,AMATERASUKAI,AMBERTOOLS,ANATOLIA,ANSURR,AQUA,ARIA,ARSHIFT,ASDP,ASSIGNSLP,ATSAS,AUTOASSIGN,AUTODOCKVINA,AZARA,BARASA,BLAST,BLASTLEGACY,BMRBCSROSETTA,CALRW,CALRWPLUS,CAMBRIDGECS,CAMERA,CARA,CARMA,CATIA,CCPNMRANALYSIS,CCPNMRANALYSISASSIGN,CCPNMRANALYSISMETABOLOMICS,CCPNMRANALYSISSCREEN,CCPNMRCHEMBUILD,CCPNMRSPECVIEW,CH3SHIFT,CHEMEX,CHESPI,CHIMERA,CING,CLUSTALWX,CLUSTER,CNS,COMPASS,CONNJUR,CONNJURWIDGETS,CPMGFITD9,CSROSETTA,CSCDP,CTFFIND,CYRANGE,CYTOSCAPE,D2D,DANGLE,DASHA,DATACHORDSA,DATACHORDSM,DATAWARRIOR,DEEPPICKER,DEERLAB,DNPLAB,DNPSOUP,DOSYTOOLBOX,DRAWNMR,DYNAMO,EASYSPIN,EISD,ENSEMBLE,FANDAS,FARSEERNMR,FASTMODELFREE,FIDNET,FITNMR,FLAMENGO,FLEXIBLEMECCANO,FUDA,GCTF,GEOMETRICAPPROXIMATION,GISSMO,GLOVE,GMX_MMPBSA,GNAT,GOAP,GREMLIN,GROMACS,GUARDD,HMMER,HMSIST,HULLRAD,HYDRONMR,ICOSHIFT,IDPCONFORMERGENERATOR,IMAGEJFIJI,IMP,INCHI,INFOS,INTERMOL,JELLYFISH,KDCALC,LARMORCA,LARMORD,LMFIT,LOCALCIDER,M2MTOOL,MADBYTE,MARS,MATLAB,MDANALYSIS,MDTRAJ,MDDNMR,MESMER,MESTRENOVA,METABOANALYSTR,METABOLOMICS_TOOLBOX,MGLTOOLS,MMMX,MMTSB,MODELFREE,MODELLER,MODULE2,MOL2SPHERE,MOLLIB,MOLMOL,MOLPROBITY,MOSART,MOTIONCOR2,MTMALIGN,MVAPACK,MZMINE,NAMD,NESSY,NESTANMR,NIGHTSHIFT,NMRSCRIPTS,NMRDRAW,NMRFAMSPARKY,NMRFIT,NMRFXANALYST,NMRFXPROCESSOR,NMRGLUE,NMRLINEGURU,NMRMIX,NMRPIPE,NMRPY,NMRSTARLIB,NMRVIEWJ,NMRWASH,NUSTOOL,NUSCON,OMEGAFOLD,OPENBABEL,OPENMM,OSPREY,PALES,PANAV,PARMED,PATI,PDBTOOLS,PDBSTAT,PEAKFIT,PEAKLISTASSIGNMENTLIBRARY,PEAKY,PINT,PLUMED,PLUQ,POISSONGENERATOR,POKY,POMONA,PONDEROSA,POOL,PPM,PROBE,PROCHECK,PROMEGA,PROTEINDYNAMICS,PROTEINVOLUME,PY4XS,PYIPINE,PYMOL,PYNMRSTAR,PYSHIFTS,QSCHED,RASMOL,RASPNMR,RCI,RCS,RDCPANDA,REDCAT,REDCRAFT,REDUCE,RELAX,RELION,REMEDIATOR,RESMAP,RINGNMRDYNAMICS,RNASTRUCTURE,RNMR,RNMRTK,ROSETTA,ROTDIF3,RUNER,SAND,SCWRL,SEER,SES,SHIFTS,SHIFTX,SHIFTX2,SHIMPANZEE,SIMPSON,SMILE,SPARTAPLUS,SPECTRUMTRANSLATOR,SPINACH,SPINDROPS,SSNAKE,SSP,STARXML,STRIDE,TALOSPLUS,TALOSN,TAMENMR,TAURENMD,TENSOR2,TENSORVIEW,TIGER,TITAN,TOPAZ,TOPSPIN,TREEVIEW,TREEVIEW3,TREND,UCBSHIFT,UDOCK,UNBLUR,UTILITY,VMD,VMDXPLOR,VORONOTA,VTX,WATTOS,WHATIF,XDRAWCHEM,XEASY,XIPP,XPLORNIH,XSSP,XYZA2PIPE

 

and a test submit file:

Universe = vanilla

Executable   = /usr/software/nmrpipe/nmrbin.linux212_64/nmrPipe

output       = nmrpipe.txt

error        = nmrpipe.err

Log          = nmrpipe2.log

requirements = NMRPIPE == "11.5 rev 2023.105.21.31"

Queue

It keeps getting dispatched to the same server. The server repeatedly logs

03/28/24 10:35:29 bind slot DevIds tag=GPUs contraint=

03/28/24 10:35:29 slot1_1: New machine resource of type 1 allocated

03/28/24 10:35:29 slot1_1: Request accepted.

03/28/24 10:35:29 slot1_1: State change: claiming protocol successful

03/28/24 10:35:29 slot1_1: Changing state: Owner -> Claimed

03/28/24 10:35:30 WARNING: forward resolution of accesspoint-nmrbox.cam.uchc.edu doesn't match 155.37.253.48!

03/28/24 10:35:30 slot1_1: Remote owner is gweatherby@xxxxxxxxxx

03/28/24 10:35:30 slot1_1: Got activate_claim request from shadow (155.37.253.48)

03/28/24 10:35:30 slot1_1: Remote job ID is 4986564.0

03/28/24 10:35:30 slot1_1[4986564.0]: Setting affinity env to 0 

03/28/24 10:35:30 slot1_1: Got universe "VANILLA" (5) from request classad

03/28/24 10:35:30 slot1_1: State change: claim-activation protocol successful

03/28/24 10:35:30 slot1_1: Changing activity: Idle -> Busy

03/28/24 10:35:30 Starter pid 35164 died on signal 6 (signal 6 (Aborted))

03/28/24 10:35:31 slot1_1: State change: starter exited

03/28/24 10:35:31 slot1_1: Changing activity: Busy -> Idle



Are space not allowed, or do we have a configuration error?

Jobs run fine without the requirements = NMRPIPE == "11.5 rev 2023.105.21.31"