When I try to run a BLAST job in the condor pool I get the following error in the log file:
000 (266.000.000) 10/13 12:04:19 Job submitted from host: <10.0.0.45:43753
...
001 (266.000.000) 10/13 12:04:22 Job executing on host: <10.0.0.45:43754>
...
002 (266.000.000) 10/13 12:04:22 (1) Job not properly linked for Condor.
...
009 (266.000.000) 10/13 12:04:22 Job was aborted by the user.
...
I have submitted the job using condor_submit using a cmd file.
Here is my entry in the cmd file:
####################
##
## Test Condor command file
##
####################
executable = /usr/local/bin/blastall
output = /home/pravenj/blast/condor/test1.out
error = /home/pravenj/blast/condor/test1.err
log = /home/pravenj/blast/condor/test1.log
arguments = -p blastn -d /home/pravenj/blast/condor/yeast.nt -i /home/pravenj/blast/condor/test.txt -o /home/pravenj/blast/condor/blast$queue
Can someone tell what that error means???
Thanks
Pravin