RE: [Condor-users] About Condor/BLAST

["Nicolas Bertrand" <nsb@xxxxxxxxx>]

Try adding "Universe = Vanilla" to your submission file.

It may be that the blast executable on your system have not been
relinked to use the "Standard universe". 

For more info, see:
http://www.cs.wisc.edu/condor/manual/v6.6/3_10Setting_Up.html#sec:full-condor-compile
and 
http://www.cs.wisc.edu/condor/manual/v6.6/3_2Installation.html#SECTION00429000000000000000

Nicolas

>>> pravenj@xxxxxxx 10/13/04 6:07 PM >>>
When I try to run a BLAST  job in the condor pool  I get the following
error in the log file:

000 (266.000.000) 10/13 12:04:19 Job submitted from host:
<10.0.0.45:43753
...
001 (266.000.000) 10/13 12:04:22 Job executing on host:
<10.0.0.45:43754>
...
002 (266.000.000) 10/13 12:04:22 (1) Job not properly linked for Condor.
...
009 (266.000.000) 10/13 12:04:22 Job was aborted by the user.
...
I have submitted the job using condor_submit using a cmd file.

Here is my entry in the cmd file:
####################
##
## Test Condor command file
##
####################
 

executable      = /usr/local/bin/blastall
output          = /home/pravenj/blast/condor/test1.out
error           = /home/pravenj/blast/condor/test1.err
log             = /home/pravenj/blast/condor/test1.log
arguments       = -p blastn -d /home/pravenj/blast/condor/yeast.nt -i
/home/pravenj/blast/condor/test.txt -o
/home/pravenj/blast/condor/blast$queue

Can someone tell what that error means???
Thanks

Pravin