On Wed, 2005-10-12 at 10:20 -0400, Natarajan, Senthil wrote: > Peter, > I ran ./setup-globus-job-manager-condor, it updated the condor.pm. > But still the output file is not copied back to the submitted machine. The directives are definitely making it into your condor job description. I even dumped the condor job description myself right before it's submitted and verified this. Now then, I went back and read the condor documentation and it looks like there is a typo in what I was given for one of the directive names: http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=3773#c1 It looks like it should be "transfer_output_files" not "transfer_output_file". I'm not sure why Condor doesn't complain about this, though. It seems like it'd be a good idea. Anyway, I'll fix this and give you a patch rather than making you download a new update package (although I'll obviously make one). > > I was wondering is this problem is happening only with GT4, or even the > older version of Globus has it. Considering these are the exact same Perl modules sans GT4 updates, GT2 shouldn't have been able to do this without hacking the condor.pm either. > Then how the people are really > submitting the Jobs to Globus to run on Condor pool? Either they aren't staging anything or the nodes of the pool share a file system with the node that GRAM is installed on. > Is that I am the only person having this problem? No, but others have opted for just hacking the condor.pm like you did. > Is there any way we can get this done, all I am trying is I have a > simple shell script it sleeps and prints counter value in the output > file. I want that output file copied back, from the executing machine to > job submitted machine.(condor does this if I directly submit to condor > pool but not through Globus) I apologize that this is taking so long. I hope I made it clear that this is development code. I think we're one step away from getting this to work, though. I appreciate you hanging in there. Unfortunately all our Condor installations have shared file systems, so it's hard for us to test this sort of thing without wonderful people like you. :) > > Here I am attaching the > 1) condor.pm. > 2) Shell Script (My test job) > 3) XML Job description > 4) logfile dump > 5) condor job description file (analogous to the Globus XML Job > description) > 6) output file got when I ran the same job by directly submitting to the > condor pool. > > Could any one please help me on this. > Thanks, > Senthil > > > -----Original Message----- > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > Sent: Tuesday, October 11, 2005 6:13 PM > To: Natarajan, Senthil > Cc: discuss@xxxxxxxxxx > Subject: RE: [Globus-discuss] Problem in Job Submission to Condor > through GT4 > > On Tue, 2005-10-11 at 17:18 -0400, Natarajan, Senthil wrote: > > Peter, > > Any way I rebuild all the 4 packages with the force option but still > > having the same problem. I noticed (update time) the > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm was not > > modified by any of these package rebuild still showing the old date > and > > time. > > I looked over the post install instructions that I gave you and noticed > I block copied the wrong setup script from my directory listing, sorry > about that. It should have been setup-globus-job-manager-condor. > Here's a dump of what I just did to verify that the condor.pm was being > updated: > > % ls -l $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm > -rw-r--r-- 1 lane lane 17K Oct 10 > 12:05 > /usr/local/globus/globus-4.0.1/lib/perl/Globus/GRAM/JobManager/condor.pm > % cd $GLOBUS_LOCATION/setup/globus/ > % ./setup-globus-job-manager-condor > checking for condor_submit... /opt/condor-6.7.6/bin/condor_submit > checking for condor_rm... /opt/condor-6.7.6/bin/condor_rm > find-condor-tools: creating ./config.status > config.status: creating condor.pm > config.status: creating globus-condor-print-config > % ls -l $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm > -rw-r--r-- 1 lane lane 17K Oct 11 > 16:06 > /usr/local/globus/globus-4.0.1/lib/perl/Globus/GRAM/JobManager/condor.pm > > Peter > > > > > Please find the attached condor.pm (after all 4 packages forceful > > rebuild) and the logfile dump. > > > > Here is package build. > > > > [globus@gis14 globus-4.0.1]$ gpt-build --force > > globus_wsrf_gram_service_java-0.78.tar.gz gcc32dbg > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > globus_wsrf_gram_service_java > > gpt-build ====> Changing to > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > a-0.78.0/ > > gpt-build ====> BUILDING globus_wsrf_gram_service_java > > gpt-build ====> Changing to > /usr/local/GridComputing/globus-4.0.1/BUILD > > gpt-build ====> REMOVING empty package > > globus_wsrf_gram_service_java-noflavor-dev > > gpt-build ====> REMOVING empty package > > globus_wsrf_gram_service_java-noflavor-rtl > > [globus@gis14 globus-4.0.1]$ gpt-build --force > > globus_scheduler_event_generator-1.0.tar.gz gcc32dbg > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > globus_scheduler_event_generator > > gpt-build ====> Changing to > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener > > ator-1.0/ > > gpt-build ====> BUILDING FLAVOR gcc32dbg > > gpt-build ====> Changing to > /usr/local/GridComputing/globus-4.0.1/BUILD > > gpt-build ====> REMOVING empty package > > globus_scheduler_event_generator-gcc32dbg-pgm_static > > gpt-build ====> REMOVING empty package > > globus_scheduler_event_generator-noflavor-data > > gpt-build ====> REMOVING empty package > > globus_scheduler_event_generator-noflavor-doc > > [globus@gis14 globus-4.0.1]$ gpt-build --force > > globus_gram_job_manager-7.7.tar.gz gcc32dbg > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > globus_gram_job_manager > > gpt-build ====> Changing to > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager-7.7/ > > gpt-build ====> BUILDING FLAVOR gcc32dbg > > gpt-build ====> Changing to > /usr/local/GridComputing/globus-4.0.1/BUILD > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager-gcc32dbg-dev > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager-gcc32dbg-pgm_static > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager-gcc32dbg-rtl > > [globus@gis14 globus-4.0.1]$ gpt-build --force > > globus_gram_job_manager_setup_condor-2.9.tar.gz gcc32dbg > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > globus_gram_job_manager_setup_condor > > gpt-build ====> Changing to > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > p_condor-2.9/ > > gpt-build ====> BUILDING globus_gram_job_manager_setup_condor > > gpt-build ====> Changing to > /usr/local/GridComputing/globus-4.0.1/BUILD > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager_setup_condor-noflavor-data > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager_setup_condor-noflavor-dev > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager_setup_condor-noflavor-doc > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager_setup_condor-noflavor-pgm_static > > gpt-build ====> REMOVING empty package > > globus_gram_job_manager_setup_condor-noflavor-rtl > > > > > > > > > > > > -----Original Message----- > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > Sent: Tuesday, October 11, 2005 3:34 PM > > To: Natarajan, Senthil > > Cc: discuss@xxxxxxxxxx > > Subject: RE: [Globus-discuss] Problem in Job Submission to Condor > > through GT4 > > > > I think the other ones are good. The extension handler seems to > working > > appropriately. All you need is the > > globus_gram_job_manager_setup_condor-2.9 package to interpret the > values > > that the extension handler is setting up for you. > > > > Peter > > > > On Tue, 2005-10-11 at 14:39 -0400, Natarajan, Senthil wrote: > > > Peter, > > > You mean to install those 4 packages only right with the --force > > option? > > > Thanks, > > > Senthil > > > > > > -----Original Message----- > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > Sent: Tuesday, October 11, 2005 2:36 PM > > > To: Natarajan, Senthil > > > Cc: discuss@xxxxxxxxxx > > > Subject: RE: [Globus-discuss] Problem in Job Submission to Condor > > > through GT4 > > > > > > Yeah, as I expected the code to put those directives in the condor > job > > > description are missing. I also see your custom additions, so you > > > probably just need to force a rebuild. Try gpt-build again with the > > > --force option followed by the instructions I gave you last time for > > > redoing the post install steps. If that still doesn't work, capture > > > your session trying to build it and send it back to the list. For > > some > > > reason that condor update package isn't being installed. > > > > > > Peter > > > > > > On Tue, 2005-10-11 at 09:34 -0400, Natarajan, Senthil wrote: > > > > Peter, > > > > Here I attached the condor.pm. > > > > I just followed your instruction to install those 4 packages > > > > (using gpt-build). Please let me know whether it has been properly > > > > installed or what needs to be done. > > > > Thanks, > > > > Senthil > > > > > > > > > > > > -----Original Message----- > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > Sent: Monday, October 10, 2005 4:22 PM > > > > To: Natarajan, Senthil > > > > Cc: discuss@xxxxxxxxxx > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to Condor > > > > through GT4 > > > > > > > > On Mon, 2005-10-10 at 15:26 -0400, Natarajan, Senthil wrote: > > > > > Peter, > > > > > I ran. /setup-globus-scheduler-provider-condor > > > > > Then I corrected the typo WhenToTransferFiles to > > > WhenToTransferOutput. > > > > > Then I submitted the job, but still it is not copying the output > > > file > > > > > back to the submitted machine. I guess since condor is running > the > > > job > > > > > in some tmp execute directory in some other machine, globus > don't > > > know > > > > > about that (some kind of communication is missing between condor > > and > > > > > globus) machine and directory, so it is not copying back. > > > > > > > > > > When you tried did your job ran in your job submitted machine > > itself > > > > or > > > > > in other machine? > > > > > > > > I only have a local, single-machine installation of Condor that I > > test > > > > with. All I do is make sure the correct directives are in the > > Condor > > > > job description. If I can verify that the directives are being > > > appended > > > > and it doesn't work, then it's a Condor issue. I know the > > directives > > > > are being written because Condor complains if I submit your job > > > > description with the typo (i.e. it complains that it has > > > > should_transfer_files but not WhenToTransferOutput. Fixing the > typo > > > > prevents Condor from complaining). > > > > > > > > > > > > > > With out running the setup-globus-scheduler-provider-condor and > > > > > modifying WhenToTransferFiles to WhenToTransferOutput, I ran > the > > > job > > > > on > > > > > Friday , It was copying the file back if the job is running in > the > > > > same > > > > > machine as the job submitted machine. > > > > > > > > > > I was curious did you test on the same machine (job submission > and > > > > > execution in the same machine) or you submitted the job in one > > > machine > > > > > and it ran on different machine? > > > > > > > > > > Please let me know. > > > > > Here I am again attaching the logfile dump and the XML Job > > > > description. > > > > > Thanks, > > > > > Senthil > > > > > > > > > > > > > > > Note: > > > > > In order to run the condor job, I added these lines. In > > > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm (in > > line > > > > > 280) > > > > > > > > > > print SCRIPT_FILE "should_transfer_files = IF_NEEDED\n"; > > > > > print SCRIPT_FILE "WhenToTransferOutput = ON_EXIT\n"; > > > > > print SCRIPT_FILE "transfer_files = ONEXIT\n"; > > > > > > > > Like I said before, this is exactly what I add if the updated > condor > > > > package is installed properly. Can you send me the following > file: > > > > > > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm > > > > > > > > I really don't think the updated condor.pm got installed. > > Everything > > > > else looks fine. I'm just not seeing output from the condor.pm > > module > > > > that indicates that it is putting these lines in the Condor job > > > > description. You should be seeing something likes this: > > > > > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Using jm supplied job > > > > dir: /home/lane/.globus/3cf6d2c0-39ba-11da-99c3-9071bceca9ea > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Adding "should_transfer_files > = > > > YES" > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Adding "WhenToTransferOutput = > > > > ON_EXIT" > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Adding "transfer_output_file > = > > > > stdout.j3, stderr.j3" Mon Oct 10 12:18:22 2005 JM_SCRIPT: About > to > > > > submit condor job > > > > > > > > That's straight out of my logfile after I installed the same > package > > > > that is on the web site and ran your corrected job description. > > > > > > > > Peter > > > > > > > > > > > > > > If I remove these line still the jobs are not running.(i.e. it > is > > > not > > > > > finding the HasTranferFile attribute in the requirement > > expression) > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > Sent: Monday, October 10, 2005 2:21 PM > > > > > To: Natarajan, Senthil > > > > > Cc: discuss@xxxxxxxxxx > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to > Condor > > > > > through GT4 > > > > > > > > > > I think the problem is that I neglected to tell you to re-run > gpt- > > > > > postinstall with the --force option. You should also be able to > > cd > > > to > > > > > $GLOBUS_LOCATION/setup/globus and run './setup-globus-scheduler- > > > > > provider-condor'. The later is much quicker. > > > > > > > > > > Also, WhenToTransferFiles should be WhenToTransferOutput. > Fixing > > > this > > > > > typo in your job description and changing it for my system ran > > just > > > > fine > > > > > for me. > > > > > > > > > > Peter > > > > > > > > > > On Mon, 2005-10-10 at 13:08 -0400, Natarajan, Senthil wrote: > > > > > > Peter, > > > > > > Here I attached the logfile dump and my XML job description. > > > > > > Still it is not copying the output file back to the job > > submitted > > > > > > machine if the job runs on different machine. But if the job > > runs > > > on > > > > > the > > > > > > same machine it copies the output file. > > > > > > Please let me know. > > > > > > > > > > > > Sorry, I couldn't get back to you. Actually I was out for more > > > than > > > > > > couple of days to attend the Grid Conference in Boston; I did > > meet > > > > > your > > > > > > colleagues. > > > > > > Thanks, > > > > > > Senthil > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > Sent: Thursday, September 29, 2005 3:53 PM > > > > > > To: Natarajan, Senthil > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to > > Condor > > > > > > through GT4 > > > > > > > > > > > > On Thu, 2005-09-29 at 14:26 -0400, Natarajan, Senthil wrote: > > > > > > > Peter, > > > > > > > I changed the > > > > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/ExtensionsHandler.pm > > > > > > > file according to your suggestion and I didn't get that > parser > > > > > error. > > > > > > I > > > > > > > submitted the job the job successfully executed but it > didn't > > > copy > > > > > the > > > > > > > output file back to the submitted machine (i.e our main > > problem > > > > and > > > > > we > > > > > > > are working on to solve that). > > > > > > > > > > > > > > I am pretty sure that what ever we are specifying under the > > > > > extensions > > > > > > > tag, globus is not recognizing it or it is not doing > anything > > > with > > > > > > that. > > > > > > > Because.... > > > > > > > > > > > > > > i) Initially I had problem in executing the job itself, > (i.e.) > > > as > > > > > soon > > > > > > > as I submitted the job to globus, globus in turn submits the > > job > > > > to > > > > > > the > > > > > > > condor pool. And the jobs are idle and not running bcos of > the > > > job > > > > > > > requirement. > > > > > > > Requirements = (OpSys == "LINUX" && Arch == "INTEL") && > (Disk > > >= > > > > > > > DiskUsage) && ((Memory * 1024) >= ImageSize) && > > > > > > (TARGET.FileSystemDomain > > > > > > > == MY.FileSystemDomain) > > > > > > > The problem here is, there is no HasFileTransfer option in > the > > > > > > > requirement expression. In order to fix this I added the > > > following > > > > > two > > > > > > > lines in the file > > > > > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm > > > > > > > print SCRIPT_FILE "should_transfer_files = IF_NEEDED\n"; > > > > > > > print SCRIPT_FILE "WhenToTransferOutput = ON_EXIT\n"; > > > > > > > This fixed the job execution problem, but not copying the > file > > > > back > > > > > to > > > > > > > the submitted machine. > > > > > > > > > > > > This is exactly what I added to the Condor job description > based > > > on > > > > > the > > > > > > extensions. What you can do is add an extension element > before > > > all > > > > > the > > > > > > other extension elements to write a log file which dumps some > > > useful > > > > > > debugging info: > > > > > > > > > > > > <extensions> > > > > > > <logfile>/home/me/logfile</logfile> > > > > > > . . . > > > > > > </extensions> > > > > > > > > > > > > If the packages are installed properly, you should see lines > > like > > > > the > > > > > > following in this log file: > > > > > > > > > > > > Wed Sep 28 13:52:53 2005 JM_SCRIPT: Adding > > "should_transfer_files > > > = > > > > > > ALWAYS" > > > > > > > > > > > > Wed Sep 28 13:52:53 2005 JM_SCRIPT: Adding > "WhenToTransferOutput > > = > > > > > > ON_EXIT" > > > > > > > > > > > > Also, I don't see you specifying any transfer_input_file or > > > > > > transfer_output_file extension elements. You need those to > > > specify > > > > > > which files to transfer to or from the compute node. GRAM > will > > > not > > > > > set > > > > > > those up for you automatically. > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > > > > ii) I submitted the problem; from here we are working to > solve > > > > this > > > > > > > problem. > > > > > > > > > > > > > > iii) Now I commented out the above two lines which I added > in > > > > > > condor.pm. > > > > > > > I submitted the XML Job description has the extensions tag > > with > > > > the > > > > > > > options condor:should_transfer_files = YES and > > > > > > > condor:WhenToTransferOutput = ON_EXIT. Now I back to stage > > one, > > > > that > > > > > > is > > > > > > > the jobs are not running and idle bcos of the requirement > > > problem, > > > > > it > > > > > > > doesn't have the file transfer option even though we > specified > > > in > > > > > the > > > > > > > job description. > > > > > > > > > > > > > > In conclusion, some thing is overriding the extensions tag > or > > > the > > > > > > > scripts like condor.pm are not understanding the extensions > > > part. > > > > > > > So after updating all these 4 packages, we are having the > same > > > > > > problem. > > > > > > > > > > > > > > Please help me on this, I am at University Of Pittsburgh, > you > > > can > > > > > > reach > > > > > > > me at 412-624-6578. > > > > > > > > > > > > > > Thanks, > > > > > > > Senthil > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > > Sent: Wednesday, September 28, 2005 2:48 PM > > > > > > > To: Natarajan, Senthil > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to > > > Condor > > > > > > > through GT4 > > > > > > > > > > > > > > On Wed, 2005-09-28 at 14:04 -0400, Natarajan, Senthil wrote: > > > > > > > > Peter, > > > > > > > > Thanks lot and I appreciate your help. > > > > > > > > I successfully installed those packages. I am trying to > > > execute > > > > > the > > > > > > > XML > > > > > > > > > > > > > > Excellent! > > > > > > > > > > > > > > > Job description with the new extension tags( > > > > > > > > condor:should_transfer_files , condor:transfer_output_file > > > etc) > > > > > Now > > > > > > > the > > > > > > > > globus parser is not recognizing these new tags its giving > > > > parser > > > > > > > error. > > > > > > > > > > > > > > > > > > > > > > > > Looks like we need to include the Namespace of where these > > new > > > > > tags > > > > > > > are > > > > > > > > located. Did you include any additional namespace while > > > testing? > > > > > > > > > > > > > > Interesting. My parser seems to be more lenient. This > should > > > be > > > > a > > > > > > > simple matter to fix, though (famous last words, I know). > If > > > you > > > > > edit > > > > > > > the > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/ExtensionsHandler.pm > > > > file > > > > > > and > > > > > > > search "new XML::Parser", you should be able to add a hash > > > > parameter > > > > > > to > > > > > > > turn off namespace processing. Change the following: > > > > > > > > > > > > > > my $extParser = new XML::Parser(Handlers => { > > > > > > > Start => sub { $self->StartTag(@_); }, > > > > > > > End => sub { $self->EndTag(@_); }, > > > > > > > Char => sub { $self->Char(@_); } }); > > > > > > > > > > > > > > to this: > > > > > > > > > > > > > > my $extParser = new XML::Parser( > > > > > > > Namespaces => 0, > > > > > > > Handlers => { > > > > > > > Start => sub { $self->StartTag(@_); }, > > > > > > > End => sub { $self->EndTag(@_); }, > > > > > > > Char => sub { $self->Char(@_); } }); > > > > > > > > > > > > > > Either that or just put a bogus xmlns attribute in the > > > extensions > > > > > > start > > > > > > > tag: > > > > > > > > > > > > > > <extensions xmlns:condor="bogus_condor_namespace"> > > > > > > > <condor:should_transfer_files>... > > > > > > > . . . > > > > > > > </extensions> > > > > > > > > > > > > > > Let me know how it goes. > > > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > > > > > > > Here I am pasting the error and the XML Job description. > > > > > > > > > > > > > > > > [senthil@gis14 GridTest]$ globusrun-ws -submit -F hostname > > -f > > > > > > > > multi_condor_test1.xml > > > > > > > > globusrun-ws: Error loading rsl > > > > > > > > globus_soap_message_module: Deserialization of > > > > > > > > {http://www.w3.org/2001/XMLSchema}string failed. > > > > > > > > globus_soap_message_module: XML parser failed to get the > > next > > > > node > > > > > > in > > > > > > > > the message > > > > > > > > globus_soap_message_module: Parser Failed Namespace prefix > > > > condor > > > > > on > > > > > > > > should_transfer_files is not defined > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <?xml version="1.0" encoding="UTF-8"?> > > > > > > > > <multiJob > > > > > > > > xmlns:gram="http://www.globus.org/namespaces/2004/10/gram/job" > > > > > > > > > > > > xmlns:wsa="http://schemas.xmlsoap.org/ws/2004/03/addressing"> > > > > > > > > <factoryEndpoint> > > > > > > > > <wsa:Address> > > > > > > > > > > > > > > > https://hostname:8443/wsrf/services/ManagedJobFactoryService > > > > > > > > </wsa:Address> > > > > > > > > <wsa:ReferenceProperties> > > > > > > > > <gram:ResourceID>Multi</gram:ResourceID> > > > > > > > > </wsa:ReferenceProperties> > > > > > > > > </factoryEndpoint> > > > > > > > > <directory>${GLOBUS_LOCATION}</directory> > > > > > > > > <count>1</count> > > > > > > > > > > > > > > > > <job> > > > > > > > > <factoryEndpoint> > > > > > > > > <wsa:Address> > > > > > > > > > > > > > > > > > https://hostname:8443/wsrf/services/ManagedJobFactoryService > > > > > > > > </wsa:Address> > > > > > > > > <wsa:ReferenceProperties> > > > > > > > > <gram:ResourceID>Condor</gram:ResourceID> > > > > > > > > </wsa:ReferenceProperties> > > > > > > > > </factoryEndpoint> > > > > > > > > > > > <executable>/home/senthil/GridTest/sh_loop</executable> > > > > > > > > <argument>60</argument> > > > > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j3</stdout> > > > > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j3</stderr> > > > > > > > > <count>1</count> > > > > > > > > <extensions> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <condor:should_transfer_files>IF_NEEDED</condor:should_transfer_files> > > > > > > > > > > > > > > > > > <condor:WhenToTransferFiles>ON_EXIT</condor:WhenToTransferFiles> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <condor:transfer_output_file>${GLOBUS_USER_HOME}/stdout.j3</condor:trans > > > > > > > > fer_output_file> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <condor:transfer_output_file>${GLOBUS_USER_HOME}/stderr.j3</condor:trans > > > > > > > > fer_output_file> > > > > > > > > </extensions> > > > > > > > > </job> > > > > > > > > > > > > > > > > <job> > > > > > > > > <factoryEndpoint> > > > > > > > > <wsa:Address> > > > > > > > > > > > > > > > > > https://hostname:8443/wsrf/services/ManagedJobFactoryService > > > > > > > > </wsa:Address> > > > > > > > > <wsa:ReferenceProperties> > > > > > > > > <gram:ResourceID>Condor</gram:ResourceID> > > > > > > > > </wsa:ReferenceProperties> > > > > > > > > </factoryEndpoint> > > > > > > > > > > > <executable>/home/senthil/GridTest/sh_loop</executable> > > > > > > > > <argument>120</argument> > > > > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j4</stdout> > > > > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j4</stderr> > > > > > > > > <count>1</count> > > > > > > > > </job> > > > > > > > > > > > > > > > > </multiJob> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > > > Sent: Wednesday, September 28, 2005 12:05 PM > > > > > > > > To: Natarajan, Senthil > > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to > > > > Condor > > > > > > > > through GT4 > > > > > > > > > > > > > > > > On Wed, 2005-09-28 at 11:36 -0400, Natarajan, Senthil > wrote: > > > > > > > > > Peter, > > > > > > > > > I tried with different combinations the package > > > > > > > > > globus_wsrf_gram_service_java-0.78.0 went through. > > > > > > > > > > > > > > > > > > But still other packages are giving problem; the problem > > is > > > it > > > > > > > > couldn't > > > > > > > > > find the file Doxyfile.in under the directory doxygen. > > > > > (Physically > > > > > > I > > > > > > > > > couldn't find the file in that directory). Could you > > please > > > > help > > > > > > me > > > > > > > on > > > > > > > > > this, I am kind of stuck. > > > > > > > > > > > > > > > > Yeah, this is my fault. I wasn't creating source packages > > > > > > correctly. > > > > > > > I > > > > > > > > talked to the GPT gurus and created a new set of source > > > packages > > > > > > that > > > > > > > > should work. I refreshed the downloads page so you should > > see > > > > the > > > > > > > > section in question dated September 28. Try those > packages. > > > > > Again, > > > > > > > > sorry for the inconvenience. It's a learning process for > me > > > > too. > > > > > :) > > > > > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > Thanks, > > > > > > > > > Senthil > > > > > > > > > > > > > > > > > > Here is the error msg. > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > globus_scheduler_event_generator-1.0.1-src.tar.gz > gcc32dbg > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > > globus_scheduler_event_generator > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener > > > > > > > > > ator-1.0.1/ > > > > > > > > > gpt-build ====> BUILDING FLAVOR gcc32dbg > > > > > > > > > GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1; > > > export > > > > > > > > > GLOBUS_LOCATION; CPP='/usr/bin/gcc -E'; export CPP; > > > > CPPFLAGS=' > > > > > > > > > -I/usr/local/GridComputing/globus-4.0.1/include > > > > > > > > > > -I/usr/local/GridComputing/globus-4.0.1/include/gcc32dbg'; > > > > > export > > > > > > > > > CPPFLAGS; CFLAGS='-g -Wall'; export CFLAGS; LDFLAGS=' > > > > > > > > > -L/usr/local/GridComputing/globus-4.0.1/lib'; export > > > LDFLAGS; > > > > > > > > > CXX='/usr/bin/g++'; export CXX; CXXCPP='/usr/bin/g++ > -E'; > > > > export > > > > > > > > CXXCPP; > > > > > > > > > CXXFLAGS='-g '; export CXXFLAGS; F77='/usr/bin/g77'; > > export > > > > > F77; > > > > > > > > > AR='/usr/bin/ar'; export AR; ARFLAGS='ruv'; export > > ARFLAGS; > > > > > > > > > RANLIB='/usr/bin/ranlib'; export RANLIB; NM='/usr/bin/nm > > > -B'; > > > > > > export > > > > > > > > NM; > > > > > > > > > CC='/usr/bin/gcc'; export CC; > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener > > > > > > > > > ator-1.0.1//configure --with-flavor=gcc32dbg > > > > > > > > > checking whether to enable maintainer-specific portions > of > > > > > > > > Makefiles... > > > > > > > > > no > > > > > > > > > Dependencies Complete > > > > > > > > > checking for a BSD-compatible install... > /usr/bin/install > > -c > > > > > > > > > checking whether build environment is sane... yes > > > > > > > > > checking for gawk... gawk > > > > > > > > > checking whether make sets $(MAKE)... yes > > > > > > > > > configure: creating ./config.status > > > > > > > > > config.status: creating Makefile > > > > > > > > > config.status: creating pkgdata/Makefile > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt > > > > > > > > > config.status: creating doxygen/Makefile > > > > > > > > > config.status: creating doxygen/Doxyfile > > > > > > > > > config.status: error: cannot find input file: > > > > > doxygen/Doxyfile.in > > > > > > > > > > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > globus_gram_job_manager-7.6.2-src.tar.gz gcc32dbg > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > globus_gram_job_manager > > > > > > > > > ERROR: The following packages are missing > > > > > > > > > Package globus_gram_job_manager-ANY-src is missing > > > > > > > > > pgm_link-globus_scheduler_event_generator-ANY-dev > > > > > > > > > Package globus_gram_job_manager-ANY-src is missing > > > > > > > > > compile-globus_scheduler_event_generator-ANY-dev > > > > > > > > > > > > > > > > > > Died at > > /usr/local/GridComputing/software/GPT/sbin/gpt-build > > > > > line > > > > > > > 362, > > > > > > > > > <FILE> line 104566. > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz > > > gcc32dbg > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > > globus_gram_job_manager_setup_condor > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > > > > > > > > p_condor-2.8.1/ > > > > > > > > > gpt-build ====> BUILDING > > > globus_gram_job_manager_setup_condor > > > > > > > > > GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1; > > > export > > > > > > > > > GLOBUS_LOCATION; > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > > > > > > > > p_condor-2.8.1//configure --with-flavor= > > > > > > > > > checking whether to enable maintainer-specific portions > of > > > > > > > > Makefiles... > > > > > > > > > no > > > > > > > > > Warning: package doesn't build with flavors ignored > > > > > > > > > Warning: ignored > > > > > > > > > Dependencies Complete > > > > > > > > > checking for a BSD-compatible install... > /usr/bin/install > > -c > > > > > > > > > checking whether build environment is sane... yes > > > > > > > > > checking for gawk... gawk > > > > > > > > > checking whether make sets $(MAKE)... yes > > > > > > > > > configure: creating ./config.status > > > > > > > > > config.status: creating Makefile > > > > > > > > > config.status: creating pkgdata/Makefile > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt > > > > > > > > > config.status: creating doxygen/Doxyfile > > > > > > > > > config.status: error: cannot find input file: > > > > > doxygen/Doxyfile.in > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > > > > Sent: Tuesday, September 27, 2005 6:38 PM > > > > > > > > > To: Natarajan, Senthil > > > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission > to > > > > > Condor > > > > > > > > > through GT4 > > > > > > > > > > > > > > > > > > I believe I fixed the > globus_wsrf_gram_service_java-0.78.0 > > > > > package > > > > > > > > > (replaced the package). I'm still trying to work with > the > > > GPT > > > > > > > experts > > > > > > > > > to figure out why the scheduler_event_generator package > > > isn't > > > > > > > > > relocatable. > > > > > > > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > > On Tue, 2005-09-27 at 16:01 -0400, Natarajan, Senthil > > wrote: > > > > > > > > > > Peter, > > > > > > > > > > I am trying to install the packages in the following > > order > > > > > > > > > > globus_wsrf_gram_service_java-0.78.0 > > > > > > > > > > globus_scheduler_event_generator-1.0.1 > > > > > > > > > > before going for the main packages. But I am getting > the > > > > > > following > > > > > > > > > > error. > > > > > > > > > > Please let me know am I trying correctly. > > > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > > globus_wsrf_gram_service_java-0.78.0-src.tar.gz > gcc32dbg > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > > > globus_wsrf_gram_service_java > > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > a-0.78.0/ > > > > > > > > > > gpt-build ====> BUILDING globus_wsrf_gram_service_java > > > > > > > > > > ant > > > > > -Denv.GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1 > > > > > > > > > > Buildfile: build.xml > > > > > > > > > > [taskdef] Could not load definitions from resource > > > > > > clovertasks. > > > > > > > It > > > > > > > > > > could not be found. > > > > > > > > > > > > > > > > > > > > initClover: > > > > > > > > > > > > > > > > > > > > init: > > > > > > > > > > [mkdir] Created dir: > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > a-0.78.0/build > > > > > > > > > > [mkdir] Created dir: > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > a-0.78.0/build/classes > > > > > > > > > > [mkdir] Created dir: > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > a-0.78.0/build/lib > > > > > > > > > > > > > > > > > > > > compile: > > > > > > > > > > [javac] Compiling 36 source files to > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > a-0.78.0/build/classes > > > > > > > > > > [javac] > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > a-0.78.0/src/org/globus/exec/service/job/ManagedJobResourceImpl.java:259 > > > > > > > > > > : warning: non-varargs call of varargs method with > > inexact > > > > > > > argument > > > > > > > > > type > > > > > > > > > > for last parameter; > > > > > > > > > > [javac] cast to java.lang.Object for a varargs > call > > > > > > > > > > [javac] cast to java.lang.Object[] for a > non-varargs > > > > call > > > > > > and > > > > > > > to > > > > > > > > > > suppress this warning > > > > > > > > > > [javac] value = > > > > > > > readMethod.invoke(resourceData, > > > > > > > > > > null); > > > > > > > > > > [javac] > > > > > > > > ^ > > > > > > > > > > [javac] > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > a-0.78.0/src/org/globus/exec/service/multi/ManagedMultiJobResource.java: > > > > > > > > > > 385: warning: non-varargs call of varargs method with > > > > inexact > > > > > > > > argument > > > > > > > > > > type for last parameter; > > > > > > > > > > [javac] cast to java.lang.Object for a varargs > call > > > > > > > > > > [javac] cast to java.lang.Object[] for a > non-varargs > > > > call > > > > > > and > > > > > > > to > > > > > > > > > > suppress this warning > > > > > > > > > > [javac] > > > > subJobDescriptions[index], > > > > > > > > null); > > > > > > > > > > [javac] > > > > > ^ > > > > > > > > > > [javac] > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > a-0.78.0/src/org/globus/exec/service/multi/ManagedMultiJobResource.java: > > > > > > > > > > 697: cannot find symbol > > > > > > > > > > [javac] symbol : variable > SUBJOB_UNSUBSCRIBE_ERROR > > > > > > > > > > [javac] location: class > > > org.globus.exec.utils.Resources > > > > > > > > > > [javac] > > > > > > > > > Resources.SUBJOB_UNSUBSCRIBE_ERROR); > > > > > > > > > > [javac] ^ > > > > > > > > > > [javac] > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > a-0.78.0/src/org/globus/exec/service/multi/ManagedMultiJobResource.java: > > > > > > > > > > 857: cannot find symbol > > > > > > > > > > [javac] symbol : variable > > SUBJOB_STUB_SECURITY_ERROR > > > > > > > > > > [javac] location: class > > > org.globus.exec.utils.Resources > > > > > > > > > > [javac] > > > > > > > > > > Resources.SUBJOB_STUB_SECURITY_ERROR); > > > > > > > > > > [javac] ^ > > > > > > > > > > [javac] Note: Some input files use unchecked or > > unsafe > > > > > > > > operations. > > > > > > > > > > [javac] Note: Recompile with -Xlint:unchecked for > > > > details. > > > > > > > > > > [javac] 2 errors > > > > > > > > > > [javac] 2 warnings > > > > > > > > > > > > > > > > > > > > BUILD FAILED > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav > > > > > > > > > > a-0.78.0/build.xml:39: Compile failed; see the > compiler > > > > error > > > > > > > output > > > > > > > > > for > > > > > > > > > > details. > > > > > > > > > > > > > > > > > > > > Total time: 15 seconds > > > > > > > > > > > > > > > > > > > > ERROR: Build has failed > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > > globus_scheduler_event_generator-1.0.1-src.tar.gz > > gcc32dbg > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > > > globus_scheduler_event_generator > > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener > > > > > > > > > > ator-1.0.1/ > > > > > > > > > > gpt-build ====> BUILDING FLAVOR gcc32dbg > > > > > > > > > > GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1; > > > > export > > > > > > > > > > GLOBUS_LOCATION; CPP='/usr/bin/gcc -E'; export CPP; > > > > > CPPFLAGS=' > > > > > > > > > > -I/usr/local/GridComputing/globus-4.0.1/include > > > > > > > > > > > > -I/usr/local/GridComputing/globus-4.0.1/include/gcc32dbg'; > > > > > > export > > > > > > > > > > CPPFLAGS; CFLAGS='-g -Wall'; export CFLAGS; > LDFLAGS=' > > > > > > > > > > -L/usr/local/GridComputing/globus-4.0.1/lib'; export > > > > LDFLAGS; > > > > > > > > > > CXX='/usr/bin/g++'; export CXX; CXXCPP='/usr/bin/g++ > > -E'; > > > > > export > > > > > > > > > CXXCPP; > > > > > > > > > > CXXFLAGS='-g '; export CXXFLAGS; F77='/usr/bin/g77'; > > > export > > > > > > F77; > > > > > > > > > > AR='/usr/bin/ar'; export AR; ARFLAGS='ruv'; export > > > ARFLAGS; > > > > > > > > > > RANLIB='/usr/bin/ranlib'; export RANLIB; > NM='/usr/bin/nm > > > > -B'; > > > > > > > export > > > > > > > > > NM; > > > > > > > > > > CC='/usr/bin/gcc'; export CC; > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener > > > > > > > > > > ator-1.0.1//configure --with-flavor=gcc32dbg > > > > > > > > > > checking whether to enable maintainer-specific > portions > > of > > > > > > > > > Makefiles... > > > > > > > > > > no > > > > > > > > > > Dependencies Complete > > > > > > > > > > checking for a BSD-compatible install... > > /usr/bin/install > > > -c > > > > > > > > > > checking whether build environment is sane... yes > > > > > > > > > > checking for gawk... gawk > > > > > > > > > > checking whether make sets $(MAKE)... yes > > > > > > > > > > configure: creating ./config.status > > > > > > > > > > config.status: creating Makefile > > > > > > > > > > config.status: creating pkgdata/Makefile > > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt > > > > > > > > > > config.status: creating doxygen/Makefile > > > > > > > > > > config.status: creating doxygen/Doxyfile > > > > > > > > > > config.status: error: cannot find input file: > > > > > > doxygen/Doxyfile.in > > > > > > > > > > > > > > > > > > > > ERROR: Build has failed > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > > > > > Sent: Tuesday, September 27, 2005 3:23 PM > > > > > > > > > > To: Natarajan, Senthil > > > > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job > Submission > > to > > > > > > Condor > > > > > > > > > > through GT4 > > > > > > > > > > > > > > > > > > > > Hmm, I just downloaded the condor setup package I have > > up > > > > > there > > > > > > > now > > > > > > > > to > > > > > > > > > > check it myself and installed it without a problem. > Try > > > > > > > downloading > > > > > > > > > > fresh copies of all the packages you need. Just for > > > sanity, > > > > > > > here's > > > > > > > > > the > > > > > > > > > > MD5 checksum: > > > > > > > > > > > > > > > > > > > > a37800228817290ccea05399ac986062 > > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz > > > > > > > > > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > > > > On Tue, 2005-09-27 at 13:50 -0400, Natarajan, Senthil > > > wrote: > > > > > > > > > > > Peter, > > > > > > > > > > > I downloaded your new package (after bootstrap) then > I > > > try > > > > > to > > > > > > > > > install > > > > > > > > > > it > > > > > > > > > > > gave me the following error. > > > > > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz > > > > > gcc32dbg > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > > > > globus_gram_job_manager_setup_condor > > > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > > > > > > > > > > p_condor-2.8.1/ > > > > > > > > > > > gpt-build ====> BUILDING > > > > > globus_gram_job_manager_setup_condor > > > > > > > > > > > > GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1; > > > > > export > > > > > > > > > > > GLOBUS_LOCATION; > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > > > > > > > > > > p_condor-2.8.1//configure --with-flavor= > > > > > > > > > > > checking whether to enable maintainer-specific > > portions > > > of > > > > > > > > > > Makefiles... > > > > > > > > > > > no > > > > > > > > > > > Warning: package doesn't build with flavors ignored > > > > > > > > > > > Warning: ignored > > > > > > > > > > > Dependencies Complete > > > > > > > > > > > checking for a BSD-compatible install... > > > /usr/bin/install > > > > -c > > > > > > > > > > > checking whether build environment is sane... yes > > > > > > > > > > > checking for gawk... gawk > > > > > > > > > > > checking whether make sets $(MAKE)... yes > > > > > > > > > > > configure: creating ./config.status > > > > > > > > > > > config.status: creating Makefile > > > > > > > > > > > config.status: creating pkgdata/Makefile > > > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt > > > > > > > > > > > config.status: creating doxygen/Doxyfile > > > > > > > > > > > config.status: error: cannot find input file: > > > > > > > doxygen/Doxyfile.in > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > I thought of doing ./bootstrap in the source > > directory, > > > it > > > > > > gave > > > > > > > > the > > > > > > > > > > > following error. > > > > > > > > > > > > > > > > > > > > > > [globus@gis14 > > > globus_gram_job_manager_setup_condor-2.8.1]$ > > > > > > > > > ./bootstrap > > > > > > > > > > > installing globus_automake_pre link > > > > > > > > > > > installing globus_automake_post link > > > > > > > > > > > installing globus_automake_pre_top link > > > > > > > > > > > installing globus_automake_post_top link > > > > > > > > > > > running aclocal -I > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/share/globus_aclocal > > > > > -I > > > > > > > > > > > > > /usr/local/GridComputing/software/GPT/share/gpt/aclocal > > > > > > > > > > > running libtoolize --copy --force > > > > > > > > > > > running automake --copy -add-missing --foreign > > > > > > > > > > > configure.in: installing `./mkinstalldirs' > > > > > > > > > > > running gpt_create_automake_rules --excludes=doxygen > > > > > > > > > > > running autoconf > > > > > > > > > > > Can't locate object method "path" via package > > > > > > > "Autom4te::Request" > > > > > > > > at > > > > > > > > > > > /usr/bin/autom4te line 81. > > > > > > > > > > > > > > > > > > > > > > ERROR: bootstrap failed! > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > > > > > > Sent: Tuesday, September 27, 2005 1:18 PM > > > > > > > > > > > To: Natarajan, Senthil > > > > > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job > > Submission > > > to > > > > > > > Condor > > > > > > > > > > > through GT4 > > > > > > > > > > > > > > > > > > > > > > This one's my fault. I forgot to bootstrap the > source > > > > > package > > > > > > > > > before > > > > > > > > > > I > > > > > > > > > > > put it up on the web site. Either download the > > package > > > > > again > > > > > > (I > > > > > > > > > > > replaced the package file) or untar the package and > > > > execute > > > > > > > > > > ./bootstrap > > > > > > > > > > > in the source package directory. You can then type > > > > > gpt-build > > > > > > > > > <flavor> > > > > > > > > > > > in the package directory. > > > > > > > > > > > > > > > > > > > > > > I'm looking into the other package version problem. > > The > > > > > major > > > > > > > > > version > > > > > > > > > > > number for the scheduler_event_generator package in > > the > > > > > trunk > > > > > > > got > > > > > > > > > > bumped > > > > > > > > > > > and I'm not sure why. It might be as simple as > > lowering > > > > the > > > > > > > major > > > > > > > > > > > version requirement in the job_manager package > > > dependency, > > > > > but > > > > > > I > > > > > > > > > want > > > > > > > > > > to > > > > > > > > > > > make sure. > > > > > > > > > > > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > > > > > > On Tue, 2005-09-27 at 11:08 -0400, Natarajan, > Senthil > > > > wrote: > > > > > > > > > > > > Peter, > > > > > > > > > > > > I tried to install the package > > > > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1, it > also > > > gave > > > > > the > > > > > > > > > > following > > > > > > > > > > > > error. > > > > > > > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz > > > > > > gcc32dbg > > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > > > > > globus_gram_job_manager_setup_condor > > > > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > > > > > > > > > > > p_condor-2.8.1/ > > > > > > > > > > > > gpt-build ====> BUILDING > > > > > > globus_gram_job_manager_setup_condor > > > > > > > > > > > > > > GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1; > > > > > > export > > > > > > > > > > > > GLOBUS_LOCATION; > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > > > > > > > > > > > p_condor-2.8.1//configure --with-flavor= > > > > > > > > > > > > sh: line 1: > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu > > > > > > > > > > > > p_condor-2.8.1//configure: No such file or > directory > > > > > > > > > > > > > > > > > > > > > > > > ERROR: Build has failed > > > > > > > > > > > > > > > > > > > > > > > > Please let me know is either the package is > missing > > > > > > something > > > > > > > or > > > > > > > > I > > > > > > > > > > am > > > > > > > > > > > > not updating correctly. > > > > > > > > > > > > Thanks, > > > > > > > > > > > > Senthil > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > > > > > > From: Natarajan, Senthil > > > > > > > > > > > > Sent: Tuesday, September 27, 2005 10:22 AM > > > > > > > > > > > > To: 'Peter G Lane' > > > > > > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job > > > Submission > > > > to > > > > > > > > Condor > > > > > > > > > > > > through GT4 > > > > > > > > > > > > > > > > > > > > > > > > Peter, > > > > > > > > > > > > As you mentioned, here I am trying to build the > > > package > > > > > from > > > > > > > Sep > > > > > > > > > > 23rd > > > > > > > > > > > > (globus_gram_job_manager-7.6.2) first and then the > > > > package > > > > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1 > > > > > > > > > > > > > > > > > > > > > > > > But I am getting this error in the Sep 23rd > package > > > > > itself, > > > > > > am > > > > > > > I > > > > > > > > > > > missing > > > > > > > > > > > > something? I have this gpt (gpt-3.2autotools2004) > > and > > > > > > > > Globus4.0.1 > > > > > > > > > > > > version. > > > > > > > > > > > > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build > > > > > > > > > > globus_gram_job_manager-7.6.2- > > > > > > > > > > > > src.tar.gz gcc32dbg > > > > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD/globus_core-4.26/ > > > > > > > > > > > > gpt-build ====> BUILDING FLAVOR gcc32dbg > > > > > > > > > > > > gpt-build ====> Changing to > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD > > > > > > > > > > > > gpt-build ====> REMOVING empty package > > > > > > > > > > globus_core-gcc32dbg-pgm_static > > > > > > > > > > > > gpt-build ====> REMOVING empty package > > > > > > > globus_core-noflavor-doc > > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > > > > > > > > > > > globus_gram_job_manager > > > > > > > > > > > > ERROR: The following packages are missing > > > > > > > > > > > > Package > > > > pgm_link-globus_scheduler_event_generator-ANY-dev > > > > > > > > version > > > > > > > > > > 0.3 > > > > > > > > > > > is > > > > > > > > > > > > incompatible with globus_gram_job_manager-ANY-src > > > > > > > > > > > > Package > > > compile-globus_scheduler_event_generator-ANY-dev > > > > > > > version > > > > > > > > > 0.3 > > > > > > > > > > > is > > > > > > > > > > > > incompatible with globus_gram_job_manager-ANY-src > > > > > > > > > > > > > > > > > > > > > > > > Died at > > > > > /usr/local/GridComputing/software/GPT/sbin/gpt-build > > > > > > > > line > > > > > > > > > > 362, > > > > > > > > > > > > <FILE> line 105362. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > > > > > > > Sent: Monday, September 26, 2005 5:54 PM > > > > > > > > > > > > To: Natarajan, Senthil > > > > > > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job > > > Submission > > > > to > > > > > > > > Condor > > > > > > > > > > > > through GT4 > > > > > > > > > > > > > > > > > > > > > > > > On Mon, 2005-09-26 at 15:32 -0400, Natarajan, > > Senthil > > > > > wrote: > > > > > > > > > > > > > Hi Peter, > > > > > > > > > > > > > I am seeing the extensions for > > > "transfer_input_file", > > > > > > > > similarly > > > > > > > > > > does > > > > > > > > > > > > it > > > > > > > > > > > > > has the "transfer_out_file" extension also in > > order > > > to > > > > > > > > transfer > > > > > > > > > > the > > > > > > > > > > > > > output back. > > > > > > > > > > > > > > > > > > > > > > > > No, but I just put up a new update package > > > > > > > > > > > > (globus_gram_job_manager_setup_condor-2.8.1) that > > has > > > > > > support > > > > > > > > for > > > > > > > > > > that > > > > > > > > > > > > one. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > To install the update package, do I need to > > compile > > > > > using > > > > > > > the > > > > > > > > > > > Makefile > > > > > > > > > > > > > and Install, and this will update only the > condor > > > part > > > > > > > right? > > > > > > > > > > > > > > > > > > > > > > > > All you should have to do is the following: > > > > > > > > > > > > > > > > > > > > > > > > gpt-build <package file name> <flavor> > > > > > > > > > > > > > > > > > > > > > > > > For example: > > > > > > > > > > > > > > > > > > > > > > > > gpt-build > > > > > > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz > > > > > > > > > > > gcc32dbg > > > > > > > > > > > > > > > > > > > > > > > > Note that on the download page it says that it > > > requires > > > > > one > > > > > > of > > > > > > > > the > > > > > > > > > > > > packages from September 23rd > > > > > > (globus_gram_job_manager-7.6.2). > > > > > > > > > Make > > > > > > > > > > > sure > > > > > > > > > > > > to get that one too. > > > > > > > > > > > > > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Actually I did added the two extensions > > > > > > > > > > > > > print SCRIPT_FILE "should_transfer_files = > > > > IF_NEEDED\n"; > > > > > > > > > > > > > > > > > > print SCRIPT_FILE "WhenToTransferOutput = > > > > ON_EXIT\n\n"; > > > > > in > > > > > > > > this > > > > > > > > > > file > > > > > > > > > > > > > ./lib/perl/Globus/GRAM/JobManager/condor.pm > > > > > > > > > > > > > in order to get the job execute in condor pool > > > > > (previously > > > > > > I > > > > > > > > had > > > > > > > > > > > > problem > > > > > > > > > > > > > in executing the job). > > > > > > > > > > > > > Please let me know. > > > > > > > > > > > > > Thanks, > > > > > > > > > > > > > Senthil > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -----Original Message----- > > > > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx] > > > > > > > > > > > > > Sent: Monday, September 26, 2005 2:46 PM > > > > > > > > > > > > > To: Natarajan, Senthil > > > > > > > > > > > > > Cc: discuss@xxxxxxxxxx > > > > > > > > > > > > > Subject: Re: [Globus-discuss] Problem in Job > > > > Submission > > > > > to > > > > > > > > > Condor > > > > > > > > > > > > > through GT4 > > > > > > > > > > > > > > > > > > > > > > > > > > The Condor adapter doesn't automatically do > this. > > > > We've > > > > > > > added > > > > > > > > > > > support > > > > > > > > > > > > > in update packages for extensions to the job > > > > description > > > > > > > that > > > > > > > > > will > > > > > > > > > > > > allow > > > > > > > > > > > > > you to set these parameters. See the Bugzilla > > entry > > > > > about > > > > > > > this > > > > > > > > > > here: > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=3773 > > > > > > > > > > > > > > > > > > > > > > > > > > Peter > > > > > > > > > > > > > > > > > > > > > > > > > > On Mon, 2005-09-26 at 13:12 -0400, Natarajan, > > > Senthil > > > > > > wrote: > > > > > > > > > > > > > > Hi, > > > > > > > > > > > > > > > > > > > > > > > > > > > > I am trying to submit a XML Job description to > > the > > > > > > Globus, > > > > > > > > > > Globus > > > > > > > > > > > in > > > > > > > > > > > > > > turn submits the job to the Condor. > > > > > > > > > > > > > > > > > > > > > > > > > > > > Condor executes the job but it is not copying > > back > > > > the > > > > > > > > output > > > > > > > > > > > file. > > > > > > > > > > > > > > But if try to submit the job directly to > condor > > > > pool, > > > > > it > > > > > > > > > copies > > > > > > > > > > > the > > > > > > > > > > > > > > output file back to the specified directory. > > Could > > > > any > > > > > > one > > > > > > > > > > please > > > > > > > > > > > > help > > > > > > > > > > > > > > me on this how to get the output file back in > > the > > > > > > > specified > > > > > > > > > > > > directory. > > > > > > > > > > > > > > > > > > > > > > > > > > > > Thanks, > > > > > > > > > > > > > > > > > > > > > > > > > > > > Senthil > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Here is the XML Job description. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <?xml version="1.0" encoding="UTF-8"?> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <multiJob > > > > > > > > > > > > > > > > > > > > > > > > xmlns:gram="http://www.globus.org/namespaces/2004/10/gram/job" > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > xmlns:wsa="http://schemas.xmlsoap.org/ws/2004/03/addressing"> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <factoryEndpoint> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <wsa:Address> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > https://gis14.exp.sis.pitt.edu:8443/wsrf/services/ManagedJobFactoryServi > > > > > > > > > > > > > ce > > > > > > > > > > > > > > > > > > > > > > > > > > > > </wsa:Address> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <wsa:ReferenceProperties> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <gram:ResourceID>Multi</gram:ResourceID> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </wsa:ReferenceProperties> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </factoryEndpoint> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <directory>${GLOBUS_LOCATION}</directory> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <count>1</count> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <job> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <factoryEndpoint> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <wsa:Address> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > https://hostname:8443/wsrf/services/ManagedJobFactoryService > > > > > > > > > > > > > > > > > > > > > > > > > > > > </wsa:Address> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <wsa:ReferenceProperties> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <gram:ResourceID>Condor</gram:ResourceID> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </wsa:ReferenceProperties> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </factoryEndpoint> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <executable>/home/senthil/GridTest/sh_loop</executable> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <argument>60</argument> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j3</stdout> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j3</stderr> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <count>1</count> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </job> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <job> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <factoryEndpoint> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <wsa:Address> > > > > > > > > > > > > > > > > > > > > > > > > > > > > https:// > > > > > > > > > > > > > > > > > hostname:8443/wsrf/services/ManagedJobFactoryService > > > > > > > > > > > > > > > > > > > > > > > > > > > > </wsa:Address> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <wsa:ReferenceProperties> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <gram:ResourceID>Condor</gram:ResourceID> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </wsa:ReferenceProperties> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </factoryEndpoint> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <executable>/home/senthil/GridTest/sh_loop</executable> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <argument>120</argument> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j4</stdout> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j4</stderr> > > > > > > > > > > > > > > > > > > > > > > > > > > > > <count>1</count> > > > > > > > > > > > > > > > > > > > > > > > > > > > > </job> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > </multiJob> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > - > > > > > > > > > > > > > To Unsubscribe: send mail to > majordomo@xxxxxxxxxx > > > > > > > > > > > > > with "unsubscribe discuss" in the body of the > > > message > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > >
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