[Condor-users] error compiling examples

[Javier Forment Millet <jforment@xxxxxxxxxxxx>]

Hi there... I've set up a Condor cluster (BTW thanks very much to the Condor
developers for the well done work...) with several dedicated machines of two
different arhitectures (Intel Xeon x86_64 and PentiumIII) all of them running
Ubuntu 7.04 server distro. According to the directions in the Condor download
page, I've used the corresponding RHL3 Condor distribution tarballs.

The condor installation was fine. All the corresponding daemons are running in
the different manager, submit and execute nodes as indicated in the
documentation. But when compiling the examples distributed with the tarball
with condor_compile (of course after having renamed the original ld system
linker to ld.real and copied the ld file coming with the tarball to the
corresponding folder) I get an error at compilation of only one of the
examples. That is, everything is OK, except for the fstream.C example. All the
other examples compile and run fine, i.e., they properly migrate, checkpoint,
do system calls, write and transmit output files, etc.

The same occurs for both submit machines I've configured (one Xeon and one
PentiumIII).

I'm using g++ GNU C++ compiler version 4.1.2. Below I copy the error obtained
with the Xeon machine, after the messages from the correct compilation of the
example before (env.C). The messages obtained when compiling examples at
PentiumIII are almost identical.

Any idea? Maybe there is a problem with the compiler version? Excuse my
ignorance with this...

Error messages:

condor_compile g++ -o env.remote env.C
LINKING FOR CONDOR : /usr/bin/ld.real -L/usr/local/condor-6.8.6/lib -Bstatic
--eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker
/lib64/ld-linux-x86-64.so.2 -o env.remote
/usr/local/condor-6.8.6/lib/condor_rt0.o
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../lib64/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/crtbeginT.o
-L/usr/lib/gcc/x86_64-linux-gnu/4.1.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.1.2
-L/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../lib64 -L/lib/../lib64
-L/usr/lib/../lib64 /tmp/ccGYOrBJ.o
/usr/local/condor-6.8.6/lib/libcondorsyscall.a
/usr/local/condor-6.8.6/lib/libcondor_z.a
/usr/local/condor-6.8.6/lib/libcomp_libstdc++.a
/usr/local/condor-6.8.6/lib/libcomp_libstdc++.a -lm
/usr/local/condor-6.8.6/lib/libcomp_libgcc.a
/usr/local/condor-6.8.6/lib/libcomp_libgcc_eh.a -lcondor_c -lcondor_nss_files
-lcondor_nss_dns -lcondor_resolv -lcondor_c -lcondor_nss_files -lcondor_nss_dns
-lcondor_resolv -lcondor_c /usr/local/condor-6.8.6/lib/libcomp_libgcc.a
/usr/local/condor-6.8.6/lib/libcomp_libgcc_eh.a
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../lib64/crtn.o
/usr/local/condor-6.8.6/lib/libcondorsyscall.a(condor_file_agent.o): In function
`CondorFileAgent::open(char const*, int, int)':
/home/condor/execute/dir_16805/userdir/src/condor_ckpt/condor_file_agent.C:99:
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
/usr/local/condor-6.8.6/lib/libcondorsyscall.a(switches.o): In function
`__gets_chk':
/home/condor/execute/dir_16805/userdir/src/condor_syscall_lib/switches.remap-LINUX.h:435:
warning: the `gets' function is dangerous and should not be used.

condor_compile g++ -o fstream.remote fstream.C
In file included from
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../include/c++/4.1.2/backward/iostream.h:31,
                 from fstream.C:23:
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../include/c++/4.1.2/backward/backward_warning.h:32:2:
warning: #warning This file includes at least one deprecated or antiquated
header. Please consider using one of the 32 headers found in section 17.4.1.2
of the C++ standard. Examples include substituting the <X> header for the <X.h>
header for C++ includes, or <iostream> instead of the deprecated header
<iostream.h>. To disable this warning use -Wno-deprecated.
LINKING FOR CONDOR : /usr/bin/ld.real -L/usr/local/condor-6.8.6/lib -Bstatic
--eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker
/lib64/ld-linux-x86-64.so.2 -o fstream.remote
/usr/local/condor-6.8.6/lib/condor_rt0.o
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../lib64/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/crtbeginT.o
-L/usr/lib/gcc/x86_64-linux-gnu/4.1.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.1.2
-L/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../lib64 -L/lib/../lib64
-L/usr/lib/../lib64 /tmp/ccBTcYtj.o
/usr/local/condor-6.8.6/lib/libcondorsyscall.a
/usr/local/condor-6.8.6/lib/libcondor_z.a
/usr/local/condor-6.8.6/lib/libcomp_libstdc++.a
/usr/local/condor-6.8.6/lib/libcomp_libstdc++.a -lm
/usr/local/condor-6.8.6/lib/libcomp_libgcc.a
/usr/local/condor-6.8.6/lib/libcomp_libgcc_eh.a -lcondor_c -lcondor_nss_files
-lcondor_nss_dns -lcondor_resolv -lcondor_c -lcondor_nss_files -lcondor_nss_dns
-lcondor_resolv -lcondor_c /usr/local/condor-6.8.6/lib/libcomp_libgcc.a
/usr/local/condor-6.8.6/lib/libcomp_libgcc_eh.a
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.1.2/../../../../lib64/crtn.o
/usr/local/condor-6.8.6/lib/libcondorsyscall.a(condor_file_agent.o): In function
`CondorFileAgent::open(char const*, int, int)':
/home/condor/execute/dir_16805/userdir/src/condor_ckpt/condor_file_agent.C:99:
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
/usr/local/condor-6.8.6/lib/libcondorsyscall.a(switches.o): In function
`__gets_chk':
/home/condor/execute/dir_16805/userdir/src/condor_syscall_lib/switches.remap-LINUX.h:435:
warning: the `gets' function is dangerous and should not be used.
/tmp/ccBTcYtj.o: In function `main':
fstream.C:(.text+0x248): undefined reference to `__stack_chk_fail'
collect2: ld returned 1 exit status
make: *** [fstream.remote] Error 1




-- 
Javier Forment Millet
Instituto de Biología Celular y Molecular de Plantas (IBMCP) CSIC-UPV
 Ciudad Politécnica de la Innovación (CPI) Edificio 8 E, Escalera 7 Puerta E
 Calle Ing. Fausto Elio s/n. 46022 Valencia, Spain
Tlf.:+34-96-3877858
FAX: +34-96-3877859
jforment@xxxxxxxxxxxx