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Re: [Condor-users] Fwd: condor help
- Date: Thu, 22 Oct 2009 20:33:44 -0400
- From: Chinh Le <lechinh@xxxxxxxxxx>
- Subject: Re: [Condor-users] Fwd: condor help
Thank you for trying to help; I need to use the standard universe ( not
the vanilla universe ), because I believe I need to checkpoint my
standalone program which takes a long time ( about 50 hours ) to
complete. Also, I need to build a standalone matlab because not all
nodes have matlab.
Hwanhee Lee wrote:
I have two questions about Condor.
I am using Condor to run R, windows statistic program.
Here is my submit file.
universe = vanilla
requirements = OpSys == "WINNT60" && Arch == "INTEL" && HAS_R==TRUE
should_transfer_files = YES
transfer_input_files = hwl0.R, lars_0.9-7.zip, mvtnorm_0.9-7.zip
when_to_transfer_output = ON_EXIT
executable = batch.bat
arguments = BATCH hwl0.R
input = hwl0.R
Output = result/out$(Process).txt
Log = result/log$(Process).txt
Error = result/err$(Process).txt
Here is my batch.bat file.
1) Install package problem
2) Running problem.
For 1), When I tried to install R packages, sometimes there is error,
sometimes there is no error.
The error is that "I cannot install packages because there is already
the same packages."
To prevent this situation, I revised my program so that don't
reinstall the existing packages.
However, I am having an error, "I cannot use the package what I tried
to install before."
Usually, in the windows xp, vista, we can always reinstall any
packages without having errors.
For 2), One of my job doesn't run on the condor machine, but the job
runs on my own computer.
It's not the problem of version of R or R packages. I already checked
The message is "subscription is out of bound."
I tried to avoid those problems for several days, but I cannot. Please
Department of Mathematical Sciences
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e-mail: hwanhel@xxxxxxxxxxxxx <mailto:hwanhel@xxxxxxxxxxxxx>
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