[Condor-users] Normal Termination (return value 1)

[Shruti Mudra <shruti.mudra@xxxxxxxxx>]

Hi Everyone,

I'm running  R jobs on Windows vista,I would appreciate ideas on why the following job failed, 

here is my submit file

************************************************************************

#test_cov_sem.condor

#

executable = C:\R\R-2.10.1\bin\Rscript.exe

arguments = Cov_Sem_Include.R

universe = vanilla

getenv = true

#requirements = ARCH == "INTEL" && OPSYS == "WINNT60" 

input = Cov_Sem_Include.R

should_transfer_files = yes

transfer_executable = false

when_to_transfer_output = ON_EXIT

transfer_input_files = Cov_Sem.R

log = test_cov_sem.log

output = test_cov_sem.out

error = test_cov_sem.err

queue 

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Log file

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000 (156.000.000) 08/21 23:50:41 Job submitted from host: <y.y.y.y:53672>

...

001 (156.000.000) 08/21 23:53:41 Job executing on host: <y.y.y.y:53673>

...

005 (156.000.000) 08/21 23:53:41 Job terminated.

(1) Normal termination (return value 1)

Usr 0 00:00:00, Sys 0 00:00:00  -  Run Remote Usage

Usr 0 00:00:00, Sys 0 00:00:00  -  Run Local Usage

Usr 0 00:00:00, Sys 0 00:00:00  -  Total Remote Usage

Usr 0 00:00:00, Sys 0 00:00:00  -  Total Local Usage

284  -  Run Bytes Sent By Job

3831  -  Run Bytes Received By Job

284  -  Total Bytes Sent By Job

3831  -  Total Bytes Received By Job

...

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here is my starterlog file

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08/22 00:03:59 Locale: English_United States.1252

08/22 00:03:59 ******************************************************

08/22 00:03:59 ** condor_starter (CONDOR_STARTER) STARTING UP

08/22 00:03:59 ** C:\condor\bin\condor_starter.exe

08/22 00:03:59 ** SubsystemInfo: name=STARTER type=STARTER(8) class=DAEMON(1)

08/22 00:03:59 ** Configuration: subsystem:STARTER local:<NONE> class:DAEMON

08/22 00:03:59 ** $CondorVersion: 7.4.2 Mar 30 2010 BuildID: 227044 $

08/22 00:03:59 ** $CondorPlatform: INTEL-WINNT50 $

08/22 00:03:59 ** PID = 3352

08/22 00:03:59 ** Log last touched 8/21 22:53:41

08/22 00:03:59 ******************************************************

08/22 00:03:59 Using config source: C:\condor\condor_config

08/22 00:03:59 Using local config sources: 

08/22 00:03:59    C:\condor\condor_config.local

08/22 00:03:59 DaemonCore: Command Socket at <y.y.y.y:55017>

08/22 00:04:00 GLEXEC_JOB not supported on this platform; ignoring

08/22 00:04:00 Setting resource limits not implemented!

08/22 00:04:00 Communicating with shadow <y.y.y.y:55010>

08/22 00:04:00 Submitting machine is "machine_name"

08/22 00:04:00 setting the orig job name in starter

08/22 00:04:00 setting the orig job iwd in starter

08/22 00:04:00 File transfer completed successfully.

08/22 00:04:01 Job 157.0 set to execute immediately

08/22 00:04:01 Starting a VANILLA universe job with ID: 157.0

08/22 00:04:01 Tracking process family by login "condor-reuse-slot1"

08/22 00:04:01 IWD: C:\condor\execute\dir_3352

08/22 00:04:01 Input file: C:\condor\execute\dir_3352\Simulate_Normal_Data.R

08/22 00:04:01 Output file: C:\condor\execute\dir_3352\test_r_out.out

08/22 00:04:01 Error file: C:\condor\execute\dir_3352\test_r.error

08/22 00:04:01 Renice expr "10" evaluated to 10

08/22 00:04:01 About to exec C:\R\R-2.10.1\bin\Rscript.exe Simulate_Normal_Data.R

08/22 00:04:01 Create_Process succeeded, pid=2500

08/22 00:04:02 Process exited, pid=2500, status=1

08/22 00:04:02 Got SIGQUIT.  Performing fast shutdown.

08/22 00:04:02 ShutdownFast all jobs.

08/22 00:04:02 **** condor_starter (condor_STARTER) pid 3352 EXITING WITH STATUS 0

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here is my startlog

***************************************************************************

08/22 00:03:58 slot1: match_info called

08/22 00:03:58 slot1: Received match <y.y.y.y:53673>#1282337984#51#...

08/22 00:03:58 slot1: State change: match notification protocol successful

08/22 00:03:58 slot1: Changing state: Unclaimed -> Matched

08/22 00:03:58 slot1: Request accepted.

08/22 00:03:58 slot1: Remote owner is "Owner_name"

08/22 00:03:58 slot1: State change: claiming protocol successful

08/22 00:03:58 slot1: Changing state: Matched -> Claimed

08/22 00:03:59 slot1: Got activate_claim request from shadow (<y.y.y.y:55013>)

08/22 00:03:59 slot1: Remote job ID is 157.0

08/22 00:03:59 slot1: Got universe "VANILLA" (5) from request classad

08/22 00:03:59 slot1: State change: claim-activation protocol successful

08/22 00:03:59 slot1: Changing activity: Idle -> Busy

08/22 00:04:02 slot1: Called deactivate_claim_forcibly()

08/22 00:04:02 slot1: State change: received RELEASE_CLAIM command

08/22 00:04:02 slot1: Changing state and activity: Claimed/Busy -> Preempting/Vacating

08/22 00:04:02 Starter pid 3352 exited with status 0

08/22 00:04:02 slot1: State change: starter exited

08/22 00:04:02 slot1: State change: No preempting claim, returning to owner

08/22 00:04:02 slot1: Changing state and activity: Preempting/Vacating -> Owner/Idle

08/22 00:04:02 slot1: State change: IS_OWNER is false

08/22 00:04:02 slot1: Changing state: Owner -> Unclaimed

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here is my shadow log

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08/22 00:03:58 Locale: English_United States.1252

08/22 00:03:58 ******************************************************

08/22 00:03:58 ** condor_shadow (CONDOR_SHADOW) STARTING UP

08/22 00:03:58 ** C:\condor\bin\condor_shadow.exe

08/22 00:03:58 ** SubsystemInfo: name=SHADOW type=SHADOW(6) class=DAEMON(1)

08/22 00:03:58 ** Configuration: subsystem:SHADOW local:<NONE> class:DAEMON

08/22 00:03:58 ** $CondorVersion: 7.4.2 Mar 30 2010 BuildID: 227044 $

08/22 00:03:58 ** $CondorPlatform: INTEL-WINNT50 $

08/22 00:03:58 ** PID = 3740

08/22 00:03:58 ** Log last touched 8/21 22:53:41

08/22 00:03:58 ******************************************************

08/22 00:03:58 Using config source: C:\condor\condor_config

08/22 00:03:58 Using local config sources: 

08/22 00:03:58    C:\condor\condor_config.local

08/22 00:03:58 DaemonCore: Command Socket at <y.y.y.y:55010>

08/22 00:03:59 Initializing a VANILLA shadow for job 157.0

08/22 00:03:59 (157.0) (3740): Request to run on slot1@machine_name <y.y.y.y:53673> was ACCEPTED

08/22 00:04:02 (157.0) (3740): Job 157.0 terminated: exited with status 1

08/22 00:04:02 (157.0) (3740): **** condor_shadow (condor_SHADOW) pid 3740 EXITING WITH STATUS 100

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and error file

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Error in file(file, "r", encoding = encoding) : 

  cannot open the connection

Calls: source -> file

In addition: Warning message:

In file(file, "r", encoding = encoding) :

  cannot open file 'C:/Users/Desktop/test_case/Cov_Sem.R': Permission denied

Execution halted

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