On 03/07/2013 12:21 PM, Francesco Prelz
I know file output will be transferred at the end of the job. And
indeed I know grid universe doesn't support output and error file
On Thu, 7 Mar 2013, Guillermo Marco Puche wrote:
I'm still with an issue. About output and error files generated
with SGE through Bosco.
They seem to don't work at all.
I've modified my sge_local_attributes.sh to this for testing
cat << EOF
#$ -N bwa_aln_Opal
#$ -o SALIDA.out
#$ -q all.q
#$ -pe orte $Slots
According to this, 'SALIDA.out' should have stdout of SGE job.
Which I need to monitor jobs.
But i really can't find the file.
Don't modify the sge_local_attributes.sh for that, but rather
set 'output = /path/to/stdout/file'
and 'error = /path/to/stderr/file' in the Condor submit file.
The output file will be transferred at the end of the job. The
path is relative to the submit node.
That's why I would like to create output and error from SGE cluster
machine. Some of my jobs take for days I need some way to way to
check if output is correct or it isn't. I thought that even if I
can't stream output from Condor I could generate output and error
More details in
but please note that stream_output and stream_error will *not*
work for jobs sent to other batch systems.