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Re: [HTCondor-users] [EXTERNAL] Re: Sample R jobs on Windows

Hi Steve,

ÂThe zip file is >25 GB. However, here's an example on somebody else's github page:Âhttps://github.com/lawinslow/condor-examples/tree/master/R-Rtools-sandbox

Basically, it is the install files and paths from R.Â

RichieÂÂ

On Fri, Sep 20, 2019 at 1:41 PM Scheel, Stephen <scheel@xxxxxxxxxxxxx> wrote:

Hi again Richie et al.,

Â

Going through the projects Richie has linked below (Thank you so much Richie!!!) I have found that they are pretty extensive but I couldnât find the R.ZIP and environmental files. Would you be able to provide these?

Â

Weâre really new to this work and donât have this kind of expertise in our shop.Â

Â

Thanks for any help!

Â

Stephen Scheel // Network Manager

Â

Miami Business School

5250 University Drive, Jenkins Bldg 211D

Coral Gables, FL 33146

email: scheel@xxxxxxxxxxxxx
office: 305-284-5449
fax: 305-284-9284

Â

From: Richard Erickson <rerickson@xxxxxxxx>
Sent: Thursday, September 19, 2019 10:56 AM
To: Scheel, Stephen <scheel@xxxxxxxxxxxxx>
Cc: HTCondor-Users Mail List <htcondor-users@xxxxxxxxxxx>
Subject: Re: [HTCondor-users] [EXTERNAL] Re: Sample R jobs on Windows

Â

Youâre welcome. I would start with the paper. âSand boxingâ code is one hard part for HTCondor (the other hard part is creating small jobs)

Â

Richie


On Sep 19, 2019, at 9:27 AM, Scheel, Stephen <scheel@xxxxxxxxxxxxx> wrote:

Richie,

Â

Thank you very much for this and the quick reply â this is quite a bit to dissect. I have some research to do regarding the âDocker Universeâ that you mentioned here.Â

Â

Again,

Â

Thank you!

Â

From: HTCondor-users <htcondor-users-bounces@xxxxxxxxxxx> On Behalf Of Richard Erickson via HTCondor-users
Sent: Wednesday, September 18, 2019 3:35 PM
To: HTCondor-Users Mail List <htcondor-users@xxxxxxxxxxx>
Cc: Richard Erickson <rerickson@xxxxxxxx>
Subject: Re: [HTCondor-users] [EXTERNAL] Re: Sample R jobs on Windows

Â

Steve,

Â

Please see my examples, note the usgs bit bucket git repo will be moving to code.usgs.gov sometime this fall

Â

And open access tutorial

ÂMore generally, I find the Docker universe to be better for running r jobs. But, I do have an example for native windowsÂ

Â

Here are other example projects

Â

The last one is 4 yrs old, but uses windows batch files.

Â

Richie

Â

Â

Â

Â


On Sep 18, 2019, at 3:07 PM, Scheel, Stephen <scheel@xxxxxxxxxxxxx> wrote:

Good morning


We are trying to get our HTCondor cluster to be usable for R job submissions. Our central manager worker and submission nodes are windows based machines. All of the worker nodes have R installed in the default paths. We are trying to get some basic R jobs submitted as a proof of concept here but no one really knows how to use actually package, and submit jobs. I have successfully and tested the generic sleep.sub job and can submit many jobs with this. What we would like is to have a sample R job that we can dissect and reverse engineer to start our submissions.

Â

Any assistance would be very much appreciated.

Â

Thanks,

Â

Steve

Â

Stephen Scheel // Network Manager

Â

Miami Business School

5250 University Drive, Jenkins Bldg 211D

Coral Gables, FL 33146

email: scheel@xxxxxxxxxxxxx
office: 305-284-5449
fax: 305-284-9284

Â

Â

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-- 
************ Richard Erickson, PhD 
   O__  ---- Research QuantitativeÂEcologist           
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