Re: [HTCondor-users] running executable that exists only in the container

[Matthew T West <m.t.west@xxxxxxxxxxxx>]

Hi Greg,

One step forward. Got rid of that particular shadow exception.

040 (008.000.000) 2023-10-02 17:01:17 Started transferring input files
ÂÂÂÂÂÂÂ Transferring to host: 
<127.0.0.1:9618?addrs=127.0.0.1-9618&alias=minicondor&noUDP&sock=slot1_1449_b394_6627>
...
040 (008.000.000) 2023-10-02 17:01:17 Finished transferring input files
...
001 (008.000.000) 2023-10-02 17:01:18 Job executing on host: 
<127.0.0.1:9618?addrs=127.0.0.1-9618&alias=minicondor&noUDP&sock=startd_989_f341>
ÂÂÂÂÂÂÂ SlotName: slot1@minicondor
ÂÂÂÂÂÂÂ CondorScratchDir = "/var/lib/condor/execute/dir_219876"
ÂÂÂÂÂÂÂ Cpus = 1
ÂÂÂÂÂÂÂ Disk = 12381279
ÂÂÂÂÂÂÂ Memory = 1918
...
007 (008.000.000) 2023-10-02 17:01:18 Shadow exception!
ÂÂÂÂÂÂÂ Error from slot1@minicondor: Singularity test failed:No 
Singularity tests for contained app:
ÂÂÂÂÂÂÂ 0Â -Â Run Bytes Sent By Job
ÂÂÂÂÂÂÂ 83791872Â -Â Run Bytes Received By Job

What sort of Singularity tests should be running along with the 
executable itself?

Matt

Matthew T. West
DevOps & HPC SysAdmin
University of Exeter, Research IT
http://www.exeter.ac.uk/research/researchcomputing/support/researchit
57 Laver Building, North Park Road, Exeter, EX4 4QE, United Kingdom

On 02/10/2023 16:53, Greg Thain via HTCondor-users wrote:
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>
> On 10/2/23 08:37, Matthew T West via HTCondor-users wrote:
> > Hi Greg,
> >
> > First, thanks for noting this flag! I figured there had to be
> > something like it.
> >
> >
> > The submit file is below:
> >
> > universeÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = container
> > container_imageÂÂÂÂÂÂÂÂ = ./lolcow_latest.sif
> > transfer_executableÂÂÂ = false
> > executableÂÂÂÂÂ = cowsay
> > argumentsÂÂÂÂÂ = moo
> > outputÂÂÂÂÂÂÂÂÂÂÂÂ = job.out
> > errorÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = job.err
> > logÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = job.log
> > request_cpusÂÂ = 1
> > request_memory = 1024M
> > request_diskÂÂ = 1024M
>
>
> Try forcing file transfer on, by setting
>
> should_transfer_files = yes
>
> when_to_transfer_out = on_exit
>
>
> and see if that work.
>
>
> -greg
>
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