Re: [HTCondor-users] running executable that exists only in the container

[Matthew T West <m.t.west@xxxxxxxxxxxx>]

Hi All,

I figured out the issue: with Singularity version 3.11, one needs `runc` 
installed to allow instances to run in OCI mode. But this isn't listed 
as an optional dependency when installing singularity-ce via EPEL.

Not sure how this OCI problem should show up in an error. Should the 
results of "Singularity Tests" be visible to job submitters? Should I 
just toss this up as an issue on the htcondor github/gitlab repo?

Cheers,
Matt

Matthew T. West
DevOps & HPC SysAdmin
University of Exeter, Research IT
http://www.exeter.ac.uk/research/researchcomputing/support/researchit
57 Laver Building, North Park Road, Exeter, EX4 4QE, United Kingdom

On 02/10/2023 17:06, Matthew T West via HTCondor-users wrote:
> CAUTION: This email originated from outside of the organisation. Do 
> not click links or open attachments unless you recognise the sender 
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>
>
> Hi Greg,
>
> One step forward. Got rid of that particular shadow exception.
>
> 040 (008.000.000) 2023-10-02 17:01:17 Started transferring input files
> ÂÂÂÂÂÂÂ Transferring to host:
> <127.0.0.1:9618?addrs=127.0.0.1-9618&alias=minicondor&noUDP&sock=slot1_1449_b394_6627> 
>
> ...
> 040 (008.000.000) 2023-10-02 17:01:17 Finished transferring input files
> ...
> 001 (008.000.000) 2023-10-02 17:01:18 Job executing on host:
> <127.0.0.1:9618?addrs=127.0.0.1-9618&alias=minicondor&noUDP&sock=startd_989_f341> 
>
> ÂÂÂÂÂÂÂ SlotName: slot1@minicondor
> ÂÂÂÂÂÂÂ CondorScratchDir = "/var/lib/condor/execute/dir_219876"
> ÂÂÂÂÂÂÂ Cpus = 1
> ÂÂÂÂÂÂÂ Disk = 12381279
> ÂÂÂÂÂÂÂ Memory = 1918
> ...
> 007 (008.000.000) 2023-10-02 17:01:18 Shadow exception!
> ÂÂÂÂÂÂÂ Error from slot1@minicondor: Singularity test failed:No
> Singularity tests for contained app:
> ÂÂÂÂÂÂÂ 0Â -Â Run Bytes Sent By Job
> ÂÂÂÂÂÂÂ 83791872Â -Â Run Bytes Received By Job
>
> What sort of Singularity tests should be running along with the
> executable itself?
>
> Matt
>
> Matthew T. West
> DevOps & HPC SysAdmin
> University of Exeter, Research IT
> http://www.exeter.ac.uk/research/researchcomputing/support/researchit 
>
> 57 Laver Building, North Park Road, Exeter, EX4 4QE, United Kingdom
>
> On 02/10/2023 16:53, Greg Thain via HTCondor-users wrote:
> > CAUTION: This email originated from outside of the organisation. Do
> > not click links or open attachments unless you recognise the sender
> > and know the content is safe.
> >
> >
> > On 10/2/23 08:37, Matthew T West via HTCondor-users wrote:
> > > Hi Greg,
> > >
> > > First, thanks for noting this flag! I figured there had to be
> > > something like it.
> > >
> > >
> > > The submit file is below:
> > >
> > > universeÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = container
> > > container_imageÂÂÂÂÂÂÂÂ = ./lolcow_latest.sif
> > > transfer_executableÂÂÂ = false
> > > executableÂÂÂÂÂ = cowsay
> > > argumentsÂÂÂÂÂ = moo
> > > outputÂÂÂÂÂÂÂÂÂÂÂÂ = job.out
> > > errorÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = job.err
> > > logÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = job.log
> > > request_cpusÂÂ = 1
> > > request_memory = 1024M
> > > request_diskÂÂ = 1024M
> >
> >
> > Try forcing file transfer on, by setting
> >
> > should_transfer_files = yes
> >
> > when_to_transfer_out = on_exit
> >
> >
> > and see if that work.
> >
> >
> > -greg
> >
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