Re: [Condor-users] Help:How to change the arguments in the submitfile?

["Peter Troeger" <peter.troeger@xxxxxxxxxxxxxxxxxx>]

The Condor 6.7 series has support for DRMAA, which is a C library 
interface for job submission and monitoring. You could write a small 
steering application by using this library, but I am not sure if the 
DRMAA-library is also available for the Windows version of Condor.

Regards,
Peter.


Philip Crawford schrieb:

> I've been using a pair of shellscripts to generate some jobs. The 
> outer one has 5 parameters, one of which is a list of data files to 
> process.
> I use the "foreach" construct which is C-shell specific. This 
> generates a submit file which contains nearly 300 jobs. The inner 
> script is the script "build_input" which builds separate input files 
> for each job. (The executable has many parameters.)
> If the list of files is "files.lst" it is passed as a parameter to the 
> script which asigns it to a variable "list_name",
> foreach f (`cat ${list_name}`)
>  set db = ${f:r}
>         ./build_input $db $max_mols $rank_mols
>         echo "transfer_input_files = ${db}.in, ${f}, ... etc" >> 
> ${submit_file}
>  echo "Arguments = -i ${db}.in -o ${db}.out.txt\n" >> ${submit_file}
>  echo "Queue\n\n" >> ${submit_file}
> end
> Depending on how your parameters vary, you may need some nested for 
> loops to do something similar.
> Hope this helps.
>  
> Cheers,
>  
> Phil Crawford
> __________________________________________________
> Philip Crawford, B. Comp. Sc., MIEEE
> Structural BioInformatics and Drug Design Group
> http://www.sbio.med.unsw.edu.au/sbio
> School of Medical Sciences
> The University of NSW
> Phone: +61-2-9385 2564
> Mobile: +61-419-294 698
> Fax: +61-2-9385 1059
> Email: p.crawford@xxxxxxxxxxx <mailto:p.crawford@xxxxxxxxxxx>
> __________________________________________________
>  
>
> ------------------------------------------------------------------------
> *From:* condor-users-bounces@xxxxxxxxxxx 
> [mailto:condor-users-bounces@xxxxxxxxxxx] *On Behalf Of *Bruno Goncalves
> *Sent:* Tuesday, 6 September 2005 4:24 AM
> *To:* Condor-Users Mail List
> *Subject:* Re: [Condor-users] Help:How to change the arguments in the 
> submitfile?
>
> You can do something like this:
>
> Arguments = arg1 arg2 arg3...
> Queue 1
> Arguments = arg1' arg2' arg3' ...
> Queue 1
> etc...
>
> Just list all the different input arguments you need to run and queue 
> a different job for each of them.
>
> On 9/5/05, *éæ* <lumiousy@xxxxxxxxxxxx 
> <mailto:lumiousy@xxxxxxxxxxxx>> wrote:
>
>          I have to run a program with a lot of different arguments,
>     but i don't know how to change them  automatically.
>          Could anybody help me please?
>          for example: the program test.exe have 5 arguments, the first
>     is constant 5,the second varies from 0 to 100, so does the third
>     and the forth.How can i write the submit file to let the job run
>     with different arguments by themselves .
>             I am looking forward to it!!! Thank you!!!
>      
>     ------------------------------------------------------------------------
>     DO YOU YAHOO!?
>     éèåèGéçïäåçäçæååéäéæèåéç
>     <http://cn.mail.yahoo.com>
>     _______________________________________________
>     Condor-users mailing list
>     Condor-users@xxxxxxxxxxx <mailto:Condor-users@xxxxxxxxxxx>
>     https://lists.cs.wisc.edu/mailman/listinfo/condor-users
>
>
>
>
> --
> *******************************************
> Bruno Miguel Tavares Goncalves, MS
> PhD Candiate
> Emory University
> Department of Physics
> Office No. N117-C
> 400 Dowman Drive
> Atlanta, Georgia 30322
> Homepage: www.bgoncalves.com <http://www.bgoncalves.com>
> Email: bgoncalves@xxxxxxxxx <mailto:bgoncalves@xxxxxxxxx>
> Phone: (404) 712-2441
> Fax:   (404) 727-0873
> *******************************************
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> Condor-users mailing list
> Condor-users@xxxxxxxxxxx
> https://lists.cs.wisc.edu/mailman/listinfo/condor-users